Plant FIBer expression Database

Potri.002G170100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61710 771 / 0 AtBECLIN1, ATATG6 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010126
[exp]
868 / 0 AT3G61710 749 / 0.0 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Lus10012631
[exp]
592 / 0 AT3G61710 522 / 0.0 BECLIN1, AUTOPHAGY 6 (.1.2.3)
Lus10012632
[exp]
268 / 2e-88 AT3G61710 228 / 2e-73 BECLIN1, AUTOPHAGY 6 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04111 APG6 Apg6 BARA domain
Representative CDS sequence
>Potri.002G170100.1 pacid=42779113 polypeptide=Potri.002G170100.1.p locus=Potri.002G170100 ID=Potri.002G170100.1.v4.1 annot-version=v4.1
ATGAAGGAGGAGGATCCTATGAGCGATAGGAATCAGACCTTTCAAGCGGATCCAAATCTTCCTCGATGGGTTTGCCAGAACTGCCGCAACCCTCTTTGCA
TCGTCGGCGTCGATTCCTTCGCCGACAAGTTCTTGAACGACTCTTCTTCTCGTTCCGGAATGCAGGGCTGTTCTGTACATGGGGCCAACAGCATTTTAGG
CTTAACACGTATGGACAATTCTTTTGTTGTGTTGCCAAAGCAAAAGCCCCAGGCACCAGGAGTCCCTCCACGTCCTCGTAGCGGAGCTGTTCAACCTGAT
ACTGGCCAGTCTGGCAAGGCAATGGAAGAATCCTTTGTGGTCGTGTACAAGTCCGAGCCATCATCTGATGGAGGTGGGTCGCATTTGCCATCAATAGAAG
GAGGGCCTAATGGTCAGCTGCATCCCAATAATGCTGGATTCAACTCTACCATAACTGTTCTCAAACGAGCATTTGAGATTGCTACAACCCAGACACAGGT
TGAGCAACCTTTATGCCTTGAATGCATGAGGGTGTTATCCGATAAGCTCAATAAGGAGGTCGAAGATGTAAACAGGGACATTGAAGCTTATGAAGCCTGC
CTTCAGCGCTTGGAGGGGGAAGCTCGTGATGTTCTTAGTGAGGCTGATTTTCTTAAAGAGAAACTAAAGATTGAGGAAGAAGAAAGAAAACTTGAAGCAG
CAATTCAAGAAACAGAGAAACAATATGCAGAAGTAAATGCTGAGCTGAAGGAACTAGAAATTAAATCTGACCGCTTTAAAGACTTGGAGGAGCGGTATTG
GCAGGAGTTCAATAATTTTCAGTTTCAGTTAATTTCTCATCAGGAAGAGAGAGATGCAATTCTGGCAAAAATTGAAGTTTCACAAGCTCATTTGGAATTG
TTGAAGAAAACTAATGTACTGAATGATGCCTTCCCCATCCATCATGATGGAGAGTTTGGTACAATAAACAACTTTCGACTTGGAAGGCTTCCTAAAATTG
CGGTTGAATGGGATGAGATAAATGCTGCCTGGGGCCAAGCCTGCCTTCTCCTTCACACAATGTGCCAATACTTCAAGCCAAAGTTTCAATATAGAATAAA
AATACTTCCCATGGGGAGTTACCCGCGGATTATGGACAGCAGCAACAATATCTACGAGCTGTTTGGTCCAGTGAACTTGTTTTGGAGTACTCGCTATGAT
AAAGCAATGACTTTGTTCCTAACATGCCTCAAGGACTTTGCGGGGTTTGCGTATTCAAAGGATCAAGAAAACAACATTCCACCTGAGAAACGCTTCAAAC
TTCCATATAAGATTGAGAATGACAAAGTGGAAAACCACTCTATTACACAGAGCTTCAATAAGCAGGAGAATTGGACCAAAGCACTCAAGTACACGCTCTG
CAATTTGAAATGGGCTCTCTATTGGTTTATTGGAAATACGAACTTCCAGCCCCTTACTGCAATGGTGTCTCCCCGAGTTGAAGTTGCAGCTGTAAATTCC
TTCTACACAAAGCGTGGTAATGATTCCAAGGCTGAATCCAGACGTCCGTGA
AA sequence
>Potri.002G170100.1 pacid=42779113 polypeptide=Potri.002G170100.1.p locus=Potri.002G170100 ID=Potri.002G170100.1.v4.1 annot-version=v4.1
MKEEDPMSDRNQTFQADPNLPRWVCQNCRNPLCIVGVDSFADKFLNDSSSRSGMQGCSVHGANSILGLTRMDNSFVVLPKQKPQAPGVPPRPRSGAVQPD
TGQSGKAMEESFVVVYKSEPSSDGGGSHLPSIEGGPNGQLHPNNAGFNSTITVLKRAFEIATTQTQVEQPLCLECMRVLSDKLNKEVEDVNRDIEAYEAC
LQRLEGEARDVLSEADFLKEKLKIEEEERKLEAAIQETEKQYAEVNAELKELEIKSDRFKDLEERYWQEFNNFQFQLISHQEERDAILAKIEVSQAHLEL
LKKTNVLNDAFPIHHDGEFGTINNFRLGRLPKIAVEWDEINAAWGQACLLLHTMCQYFKPKFQYRIKILPMGSYPRIMDSSNNIYELFGPVNLFWSTRYD
KAMTLFLTCLKDFAGFAYSKDQENNIPPEKRFKLPYKIENDKVENHSITQSFNKQENWTKALKYTLCNLKWALYWFIGNTNFQPLTAMVSPRVEVAAVNS
FYTKRGNDSKAESRRP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G61710 AtBECLIN1, ATAT... BECLIN1, AUTOPHAGY 6 (.1.2.3) Potri.002G170100
[exp]
0 1
AT3G27020 YSL6 YELLOW STRIPE like 6 (.1) Potri.001G327300
[exp]
3.60 0.6604
AT4G37880 LisH/CRA/RING-U-box domains-co... Potri.012G127300
[exp]
4.89 0.6196
AT5G61060 HDA5, HDA05, AT... histone deacetylase 5 (.1.2) Potri.004G092900
[exp]
6.32 0.6164
AT5G05930 ATGC1 ARABIDOPSIS GUANYLYL CYCLASE 1... Potri.008G062100
[exp]
6.70 0.6024
AT2G35680 Phosphotyrosine protein phosph... Potri.003G080000
[exp]
7.34 0.5852
AT1G18470 Transmembrane Fragile-X-F-asso... Potri.015G050300
[exp]
9.48 0.6213
AT5G51570 SPFH/Band 7/PHB domain-contain... Potri.015G130600
[exp]
9.89 0.5794
AT1G07570 APK1A Protein kinase superfamily pro... Potri.016G094300
[exp]
12.24 0.5543
AT5G03540 ATEXO70A1 exocyst subunit exo70 family p... Potri.008G017800
[exp]
18.97 0.5281
AT2G40810 ATATG18C homolog of yeast autophagy 18C... Potri.019G062800
[exp]
20.12 0.5554

Potri.002G170100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.