Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01000 125 / 2e-31 Ubiquitin-like superfamily protein (.1) AT3G06455 84 / 2e-17 ubiquitin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098100 [exp] 406 / 1e-138 AT4G01000 135 / 5e-35 Ubiquitin-like superfamily protein (.1) Potri.015G017200 [exp] 43 / 0.0004 AT5G06160 720 / 0.0 ATROPOS, splicing factor-related (.1) Potri.012G012800 [exp] 43 / 0.0005 AT5G06160 718 / 0.0 ATROPOS, splicing factor-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010125 [exp] 143 / 1e-37 AT4G01000 333 / 6e-111 Ubiquitin-like superfamily protein (.1) Lus10012629 [exp] 139 / 2e-36 AT4G01000 327 / 2e-108 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF13019 [poplar] [flax] Sde2_N_Ubi Silencing defective 2 N-terminal ubiquitin domain CL0072 [poplar] [flax] PF13297 [poplar] [flax] Telomere_Sde2_2 Telomere stability C-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G170200.1 pacid=42779584 polypeptide=Potri.002G170200.1.p locus=Potri.002G170200 ID=Potri.002G170200.1.v4.1 annot-version=v4.1 ATGGAAGATCACAAGGATCCTATGCCCTTCCAGATCTTCGCCAAGTTTCTGGACGGAAAAACAAAAGTCTTGAATTTCAAAACCCCAAGCTCATGTACCG CCCAAGCAATCAAGCAACAAATCTTCCAAGTCACTCAAATCCCTATTCACTATCAACGCTTGGTGTGCAGAGGGTTCCAATTAAACGACGATGCAATCAT CACTACCCCCGAATCCACCGTCTATCTCCTCCTCCGTCTCCTCGGTGGCAAAGGCGGTTTCGGGTCACTTCTCCGTGGGGCCGCTACGAAAGCGGGCCAA AAGAAGACGAATAATTTTGACGCGTGTCGGGATATGAGTGGAAGGAGGTTAAGGCATGTGAATGCGGAGAAGAGGTTGGAGGAGTGGAGGGCGGAGGAAG AGGATAGGCGGATGGAGAAGATGGCGGAGGAGTTTATTAAGAAGAAGGCTAAGAAAGGGAAGAAAGGGGTTGGAGATGGTGAGGCGGAGAAGTATGTGGC AAAGTATAGGGAGGACTCTGCGAAATGTGCTGCAGTAGTTGAGGAGGCTGTGAGGGAGGTTCTTGGGAATGGGAATGGGTTTAGGAAGAGAAAGGGGAAG GGGAAGGGGGTTGTGGAAGGCGCAGAAGCCAAGAAATTAAAGATTTGGATGGGCAAGAGAAAAGTGGATGAAAGTGACAGTGAAGGAATGGACGAAGATA GCAGTGATGAGGAAAATGAGAAATCTGTTGTTTTAAATAATGGGAGTCATTCAGATTCAAATAAAGAAGTTGAGGGAAGTTCAGACTCGGTTACTGGAAA TCGAGATGGAGAATGTTCTGGTGGTGCCTCATGCAGCTCTGAGGAAGAAAAGGAGGCTTCTTCAGAGCGAAGCTTGAAATCTAATCCCTGTGGAGAAGTT GCCTTGAACAAAGAGGATGAATTGGTTGAAGCACAGATTCTTGAGGAAACAGTAGCACAGAATGCCAATGTAGCTTGCTTGAAGACAGAAGAGATTTCTG AAACTGAAGCACTTGAGGCTGAAAGGAAGGAGAATGTTGGACCTGATTCTCAATGTCCAGATGCTTCAAGTTCTGGAAATGGTGGAATTATTGAAAGCGG ACTGGTTATTCCTGAAGCCAATGGTTTCTCTCAATCAAAACCTGAGTCAAATGAATTAGTTAACGAAGGCAATGGAGATATGGAGAAACCACTAATTTTT GATGAATTCAATTCAGCATCAGAGTTGGAGGTACTTGGCATGGAAAGGCTGAAGACTGAGCTGCAGGTCCGTGGGCTTAAATGTGGAGGTACTTTGCAGG AACGCGCTGCACGGCTTTTCCTCTTGAAATCTACCCCTTTGGAGAAGCTTCCCAAAAAACTACTTGCTAAGAAATGA
AA sequence Show only first row Show all	>Potri.002G170200.1 pacid=42779584 polypeptide=Potri.002G170200.1.p locus=Potri.002G170200 ID=Potri.002G170200.1.v4.1 annot-version=v4.1 MEDHKDPMPFQIFAKFLDGKTKVLNFKTPSSCTAQAIKQQIFQVTQIPIHYQRLVCRGFQLNDDAIITTPESTVYLLLRLLGGKGGFGSLLRGAATKAGQ KKTNNFDACRDMSGRRLRHVNAEKRLEEWRAEEEDRRMEKMAEEFIKKKAKKGKKGVGDGEAEKYVAKYREDSAKCAAVVEEAVREVLGNGNGFRKRKGK GKGVVEGAEAKKLKIWMGKRKVDESDSEGMDEDSSDEENEKSVVLNNGSHSDSNKEVEGSSDSVTGNRDGECSGGASCSSEEEKEASSERSLKSNPCGEV ALNKEDELVEAQILEETVAQNANVACLKTEEISETEALEAERKENVGPDSQCPDASSSGNGGIIESGLVIPEANGFSQSKPESNELVNEGNGDMEKPLIF DEFNSASELEVLGMERLKTELQVRGLKCGGTLQERAARLFLLKSTPLEKLPKKLLAKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01000			Ubiquitin-like superfamily pro...		Potri.002G170200 [exp]	0	1
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.001G196500 [exp]	1.00	0.8572
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.017G072100 [exp]	5.83	0.8166
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.016G023800 [exp]	6.00	0.8009
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.008G059600 [exp]	7.21	0.8127
AT4G30600			signal recognition particle re...		Potri.018G105900 [exp]	8.06	0.7360
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	11.61	0.8043
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.001G140300 [exp]	15.00	0.8138
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Potri.006G009100 [exp]	16.97	0.7549
AT5G58020			unknown protein		Potri.006G186900 [exp]	18.97	0.7766
AT1G34750			Protein phosphatase 2C family ...		Potri.002G097200 [exp]	19.26	0.7934

Compare expression of checked genes

Potri.002G170200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.