Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61740 1140 / 0 SDG14, ATX3 SET domain protein 14 (.1.2) AT5G53430 1009 / 0 SET29, ATX5, SDG29 SET domain group 29 (.1) AT4G27910 994 / 0 SDG16, ATX4 SET domain protein 16 (.1) AT2G31650 242 / 4e-66 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT1G05830 237 / 2e-64 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT5G42400 122 / 7e-28 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G76710 95 / 4e-20 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT1G02580 92 / 1e-18 SDG5, EMB173, MEDEA, FIS1, MEA SET DOMAIN-CONTAINING PROTEIN 5, MEDEA, FERTILIZATION INDEPENDENT SEED 1, EMBRYO DEFECTIVE 173, SET domain-containing protein (.1) AT2G23380 91 / 2e-18 SET1, SDG1, ICU1, CLF SETDOMAIN 1, SETDOMAIN GROUP 1, INCURVATA 1, CURLY LEAF, SET domain-containing protein (.1) AT3G14740 89 / 2e-18 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G098400 [exp] 1788 / 0 AT3G61740 1120 / 0.0 SET domain protein 14 (.1.2) Potri.012G013900 [exp] 1085 / 0 AT5G53430 1423 / 0.0 SET domain group 29 (.1) Potri.015G014300 [exp] 1079 / 0 AT5G53430 1322 / 0.0 SET domain group 29 (.1) Potri.002G232800 [exp] 241 / 8e-66 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.014G146300 [exp] 238 / 2e-64 AT1G05830 1273 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.018G023000 [exp] 138 / 1e-32 AT1G05830 160 / 2e-39 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Potri.002G001000 [exp] 127 / 1e-29 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G260100 [exp] 121 / 1e-27 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G195400 [exp] 103 / 7e-23 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012626 [exp] 1249 / 0 AT3G61740 1077 / 0.0 SET domain protein 14 (.1.2) Lus10010121 [exp] 1175 / 0 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10030262 [exp] 841 / 0 AT3G61740 742 / 0.0 SET domain protein 14 (.1.2) Lus10019026 [exp] 830 / 0 AT4G27910 1171 / 0.0 SET domain protein 16 (.1) Lus10005007 [exp] 490 / 9e-157 AT4G27910 611 / 0.0 SET domain protein 16 (.1) Lus10004012 [exp] 459 / 5e-149 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10025508 [exp] 246 / 4e-67 AT1G05830 1256 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10026725 [exp] 244 / 1e-66 AT1G05830 1272 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) Lus10016051 [exp] 118 / 1e-26 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10025172 [exp] 117 / 2e-26 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0049 [poplar] [flax] Tudor PF00855 [poplar] [flax] PWWP PWWP domain CL0049 [poplar] [flax] PF00856 [poplar] [flax] SET SET domain CL0390 [poplar] [flax] zf-FYVE-PHD PF13831 [poplar] [flax] PHD_2 PHD-finger CL0390 [poplar] [flax] zf-FYVE-PHD PF13832 [poplar] [flax] zf-HC5HC2H_2 PHD-zinc-finger like domain
Representative CDS sequence Show only first row Show all	>Potri.002G170600.2 pacid=42777954 polypeptide=Potri.002G170600.2.p locus=Potri.002G170600 ID=Potri.002G170600.2.v4.1 annot-version=v4.1 ATGATAATAAAAAAAATTATGAAAGGCGAAATGCGGCGAGGCAATACGAGAGAGGGGGCTTGTAACGAATTCGACGAGGAGGAGAATTTTGAATACGAAT TGATTCCAAAGAAGCGAAAGTTGAATGGATACAATTCAAATTCAATGGGTGTATATAGTGAATCTGATGATTTTAGGAGGGGTTCATATACTTATCGCAG CGAAGAATCTTACTGGGCTAACGAGGTTCAGTCTAATTCGAAGAAGAGATTGAAGAATCAGAGTTCGGTGAGCTCTCGAAAGTCCATATCAAGATCTTCT CGAGGGCGAGTGAAAATGCTTCCTTCGAGGTTTAATGATTCGGTTGTGGATATTTGGAAAGGCGAGGAATGTAGAATTGATGATACTGATATGGGAATAG AGGATGATGAATTTCAAGATAGAAAGGATTTTTGTAGTGAGAAATATAGATATAACAGTAAATTCGATTTCGTAAGCTCTAATTCCTACCCCTTCTACGC CGCGGAAGGAAATAGAGAAGCGGGTCAGTTAGGGTGTAACGATTTTCAGTATAGAAATTGTAATACTTCAGAGTTTTTGAGTTCGGGTAATCTATTGATA GAAGACGGGGAGTTTGTGCCAAAATATAGGTATACAGGCTTGAATAAAATGAGAAGAGAAAGAGCTCATAAAAAGGACGTTTATAAACCAGAGGATTTTG CTTTGGGTGATATAGTTTGGGCCAAATGCGGGAAGAGATACCCATGGTGGCCTGCTATTGTGATTGATCCCATTTTGCAAGCTCCTGATGCTGTGCTCAG TTGTTGTGTTCCTGGTGCTATTTGCATTATGTTTTATGGTTACTCTAAAAATGGAACGCAAAGGGACTATGCATGGGTGAAACAGGGGATGGTATTCCCC TTTGCAGAATTCATGGAAAGATTTCAGGTGCAGTCTCAAATGTTCAAGTGCAAGCTGAGTGACTTTCAGGTGGCACTAGAAGAGGCAATTTTAGCAGAAA GTGGTTTCCAAGGCATGGACAGCAGTTGTGTGGAAATAGCATATCCTGAAGCTCATCCCACTCGATTCCAAGAAGCCAGCTGTTCAATTCAGGATCAGGA CTTCTACAATCAACAACAGGATGCATGTTATAAAGACATGAAAATCTGTGATGGCTGCAATCTAATCTTGCCATGCAAAATTGTGAAGAAAAGGAGGAGA TCAACATTTCAAACTGAACTTCTATGTAAACATTGTGCTAAGTTAAGAAAATCAAAGCAGTATTGTGGCATATGCAAGAAGACCTGGCATCATTCAGATG GAGGGAATTGGGTATGCTGTGATGGCTGTAATGTATGGGTGCACGCTGAGTGTGACAACATTTCCAGCAAACTTTTCAAGGACATGGAGGATATTGATTA TTATTGTCCTGACTGCAAAGTAAAGTTTAAATTTGTGCAACCAGATTTAGAGAGAAGGAAGCCTCCAGTAAAGTCAACAGAAAACAGTGGACAGGCTGCA CCACTTGACAAGGTGACAGTTATCTGCAATGGGATGGAAGGAACATATTTTCCTAAACTTCATTTAATTGAGTGCCACTGCAGTTCATGTGGGTCACGGA AACAAGCACCGAGTGAATGGGAAAAGCACACTGGGTGTAGATCTAAAAAATGGAAGCATAGCGTGAAAATCAAAGACACAATGTTACCACTGGCTCAATG GATTGCTGAATATAATGCATGTGTAGACCCTCTAAAGTTAGATGAGCAGAAGCTACTTGCTTTTGTGCAAGAGAAGTATGAACCTATTTATGCAAAATGG ACATCAGAAAGATGTTCTGTTTGTAGATGGGTTGAAGATTGGGATGATAACAAAATTATAATTTGCAACAGGTGTCAAATAGCTGTCCACCAAGAATGCT ATGGGGCAATTAATGTTCAGGATTTTGCTTCGTGGGTGTGCAGAGCATGTGAAACACCTGATGTTAAGAAGGAGTGCTGCCTTTGCCCTGTAAAAGGGGG TGCTCTGAAGCCAAGTGATATTGAAAAACTGTGGGTTCACGTCATATGTGCTTGGTTTCAACCTGAAGTTGGTTTCTTGAACCATGAGAAAATGGAACCT GCCACTGGAATACTTAGAATTCCATCGACATCATTTATAAAGAGGTGTGTTATCTGTAAGCAGACCTATGGTTCGTGCACCCAGTGTTGCAAGTGTGCCA CCTATTTCCATGCAACGTGTGCCTCAAGAGCAGGATATTTCATGGAGTTGAACTGCACAGAGAAGAGTGGTATGCAAGTCACAGAAAAGTTAATATATTG TGCTGTTCACAGGAAGCCAAACCCAGATTCTGTTGTAGTCGTGCGTACTCCTTCAGGGATTTTCTCTGGCAGAAGTTTTCTTCAGAATCGGAATGGGTGC TTGAGGGGTTCAAGGTTGGTTTCATCCAAGAAAGTGGAACTTCCAGATCCCTCAACCAGAGAGAGTAATGACTTTGAACCTGTCTCCGCTGCAAAGTGCC GTGCTTTTAAAAGAACAAACTATAAGGTGTCTGAAGGAGAGCCAATATTCCACCGATTGATGGGACCAAGACATGATTCTTTACATTCAATTATAAGCCT GAGCACCTATAAAGAAACTGGAGATTCTACAGTTTTCTCTTCATTCAAAGAACGCCTTTGCCATTTACAGAAAACTGAAAATCATCGGGTGTGTTTTGGT AAATCTGGTATACATGGATGGGGCCTCTTTGCACGCAGAAATATTCAAGAAGGAGAAATGGTCATTGAGTATCGTGGAGAGAAGGTGAGGCGGAGTGTTG CTGATCTGAGAGAGGCACGGTACCGTTTGGAAGGCAAGGATTGTTATCTGTTCAAGATCAGCGAGGAAGTTGTAATTGATGCAACAAATAAGGGGAATAT AGCACGGTTAATCAATCATTCGTGTATGCCCAATTGCTATGCGAGGATAATGAGTGTTGGTGACGTGGAGAATCGGATTGTTCTCATTGCCAAGACCGAT GTTTCTGCCGGCAACGAGCTAACGTACGATTACTTGTTTGATCCAGATGAGCGTGATGACTTGAAAGTTCCTTGCCTCTGTAAAGCTCCCAATTGCAGGA AGTTCATGAATTAA
AA sequence Show only first row Show all	>Potri.002G170600.2 pacid=42777954 polypeptide=Potri.002G170600.2.p locus=Potri.002G170600 ID=Potri.002G170600.2.v4.1 annot-version=v4.1 MIIKKIMKGEMRRGNTREGACNEFDEEENFEYELIPKKRKLNGYNSNSMGVYSESDDFRRGSYTYRSEESYWANEVQSNSKKRLKNQSSVSSRKSISRSS RGRVKMLPSRFNDSVVDIWKGEECRIDDTDMGIEDDEFQDRKDFCSEKYRYNSKFDFVSSNSYPFYAAEGNREAGQLGCNDFQYRNCNTSEFLSSGNLLI EDGEFVPKYRYTGLNKMRRERAHKKDVYKPEDFALGDIVWAKCGKRYPWWPAIVIDPILQAPDAVLSCCVPGAICIMFYGYSKNGTQRDYAWVKQGMVFP FAEFMERFQVQSQMFKCKLSDFQVALEEAILAESGFQGMDSSCVEIAYPEAHPTRFQEASCSIQDQDFYNQQQDACYKDMKICDGCNLILPCKIVKKRRR STFQTELLCKHCAKLRKSKQYCGICKKTWHHSDGGNWVCCDGCNVWVHAECDNISSKLFKDMEDIDYYCPDCKVKFKFVQPDLERRKPPVKSTENSGQAA PLDKVTVICNGMEGTYFPKLHLIECHCSSCGSRKQAPSEWEKHTGCRSKKWKHSVKIKDTMLPLAQWIAEYNACVDPLKLDEQKLLAFVQEKYEPIYAKW TSERCSVCRWVEDWDDNKIIICNRCQIAVHQECYGAINVQDFASWVCRACETPDVKKECCLCPVKGGALKPSDIEKLWVHVICAWFQPEVGFLNHEKMEP ATGILRIPSTSFIKRCVICKQTYGSCTQCCKCATYFHATCASRAGYFMELNCTEKSGMQVTEKLIYCAVHRKPNPDSVVVVRTPSGIFSGRSFLQNRNGC LRGSRLVSSKKVELPDPSTRESNDFEPVSAAKCRAFKRTNYKVSEGEPIFHRLMGPRHDSLHSIISLSTYKETGDSTVFSSFKERLCHLQKTENHRVCFG KSGIHGWGLFARRNIQEGEMVIEYRGEKVRRSVADLREARYRLEGKDCYLFKISEEVVIDATNKGNIARLINHSCMPNCYARIMSVGDVENRIVLIAKTD VSAGNELTYDYLFDPDERDDLKVPCLCKAPNCRKFMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Potri.002G170600 [exp]	0	1
AT3G61690			nucleotidyltransferases (.1)		Potri.012G000900 [exp]	2.00	0.8952
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	4.00	0.8988
AT3G08020			PHD finger family protein (.1)		Potri.009G059700 [exp]	4.47	0.8843
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	4.58	0.8862
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	6.92	0.8801
					Potri.004G102400 [exp]	7.21	0.8323
AT1G24300			GYF domain-containing protein ...		Potri.001G326700 [exp]	8.24	0.8848
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Potri.005G202000 [exp]	10.48	0.8566
AT1G77800			PHD finger family protein (.1....		Potri.002G089400 [exp]	11.48	0.8835
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.014G055800 [exp]	12.40	0.8641

Compare expression of checked genes

Potri.002G170600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.