Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61770 331 / 3e-114 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G67600 126 / 7e-36 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) AT1G24350 123 / 8e-35 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) AT3G21610 114 / 3e-31 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) AT3G12685 72 / 5e-15 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056600 [exp] 126 / 1e-35 AT1G67600 254 / 8e-88 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Potri.011G087100 [exp] 120 / 2e-33 AT3G21610 204 / 9e-68 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.014G156000 [exp] 104 / 4e-27 AT3G21610 184 / 5e-60 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.002G226900 [exp] 100 / 7e-26 AT3G21610 218 / 2e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Potri.010G176100 [exp] 64 / 8e-12 AT3G12685 193 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030253 [exp] 242 / 2e-81 AT3G61770 245 / 5e-83 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10014550 [exp] 117 / 2e-33 AT3G61770 115 / 4e-33 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10006432 [exp] 119 / 4e-33 AT1G67600 245 / 3e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10011373 [exp] 119 / 5e-33 AT1G67600 245 / 2e-84 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1) Lus10003670 [exp] 117 / 7e-32 AT3G21610 219 / 1e-73 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10000883 [exp] 116 / 7e-32 AT3G21610 224 / 3e-76 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10035299 [exp] 111 / 1e-29 AT3G21610 275 / 1e-95 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10030025 [exp] 112 / 2e-29 AT3G21610 243 / 6e-82 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2) Lus10036984 [exp] 98 / 2e-25 AT1G24350 185 / 2e-61 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1.2.3) Lus10001841 [exp] 76 / 1e-15 AT3G12685 206 / 2e-66 Acid phosphatase/vanadium-dependent haloperoxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0525 [poplar] [flax] pap2 PF02681 [poplar] [flax] DUF212 Divergent PAP2 family
Representative CDS sequence Show only first row Show all	>Potri.002G171300.1 pacid=42776934 polypeptide=Potri.002G171300.1.p locus=Potri.002G171300 ID=Potri.002G171300.1.v4.1 annot-version=v4.1 ATGGATTCTCTAACACTCACCAAACCCATCTTTAACTCTTTCTACTTCACTCCCACAAATCCAAGAACCAAACTTTGGTGTTCTGGCCACTTTTCATTTT TCAAGTCCACTCACCTTACCAAATTCAAAAACTATCCAATTTGTTTTTCGTATAAAAACCCTTCAAATCATCAAAACCCAAAACCAAGAAACAAAAATAA CAGAACTTTCTTATCAAACCCTTTGCGGGCTTTGGTCCCGATAATGGAACACATCAAAGCCTTAGCTTCTTCACAAACAAAAAAATGGGCTTCACAGCTA CAAGCATACAGTGATGACTCGGAGAAGGTGATGGGTGAACACAACGGGGATTTTACGCTAAATGGAGCGTTTGGATTGGCTTTATTGAGTATAACATCGC ATGCGAAAGTAAAGATCAGTCCTTTTGTGGCAACATTAGCTGCAAACCCAACTTTTATATCGGGTTTGTTTGCTTGGTTTATTGCACAGTCAATGAAAGT GTTTTTGAATTTTTTTGTGGAGAGGAAATGGGATTTGAGATTATTGTTTGCCTCTGGAGGGATGCCGTCTTCCCACTCTGCTTTGTGTACTGCTTTGACA ACATCAGTTGCGTTTTGTCATGGAGTGGCTGATTCGTTATTTCCTGTTTGTTTGGGGTTTAGTCTTATAGTTATGTATGATGCAATTGGTGTCAGGCGTC ATGCTGGGATGCAAGCTGAGGTTCTTAATATGATCGTTGAGGACCTGTTTCAAGGGCATCCTATCAGTCAAAGAAAGCTCAAGGAACTTCTTGGACATAA CCCATCACAAGTTCTTGCTGGAGCTTTGCTTGGCATCTTGGTAGCCTGTGTATGTTGCCAAGGTTGCTTAGTGGTAACCTAG
AA sequence Show only first row Show all	>Potri.002G171300.1 pacid=42776934 polypeptide=Potri.002G171300.1.p locus=Potri.002G171300 ID=Potri.002G171300.1.v4.1 annot-version=v4.1 MDSLTLTKPIFNSFYFTPTNPRTKLWCSGHFSFFKSTHLTKFKNYPICFSYKNPSNHQNPKPRNKNNRTFLSNPLRALVPIMEHIKALASSQTKKWASQL QAYSDDSEKVMGEHNGDFTLNGAFGLALLSITSHAKVKISPFVATLAANPTFISGLFAWFIAQSMKVFLNFFVERKWDLRLLFASGGMPSSHSALCTALT TSVAFCHGVADSLFPVCLGFSLIVMYDAIGVRRHAGMQAEVLNMIVEDLFQGHPISQRKLKELLGHNPSQVLAGALLGILVACVCCQGCLVVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61770			Acid phosphatase/vanadium-depe...		Potri.002G171300 [exp]	0	1
AT4G24280		CPHSC70-1	chloroplast heat shock protein...		Potri.004G224400 [exp]	2.44	0.9128	Pt-HSC70.1
AT5G15450		AtCLPB3, APG6, ...	CASEIN LYTIC PROTEINASE B-P, A...		Potri.017G090600 [exp]	3.16	0.9121
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Potri.006G138600 [exp]	3.87	0.8901	CPN21.1
AT2G21860			violaxanthin de-epoxidase-rela...		Potri.005G085800 [exp]	4.69	0.8543
AT2G28000		Cpn60alpha1, SL...	SCHLEPPERLESS, chaperonin-60al...		Potri.004G213400 [exp]	4.89	0.8881	SLP.2
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.005G159100 [exp]	7.48	0.8462
AT5G24240			Phosphatidylinositol 3- and 4-...		Potri.015G013600 [exp]	9.48	0.8459
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.001G030000 [exp]	9.79	0.8535
AT1G52920		GPCR, GCR2	G-PROTEIN COUPLED RECEPTOR 2, ...		Potri.001G403200 [exp]	10.90	0.8412
					Potri.011G096702 [exp]	11.22	0.8353

Compare expression of checked genes

Potri.002G171300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.