Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64460 86 / 5e-22 Protein kinase superfamily protein (.1) AT2G46500 84 / 1e-20 UBDKGAMMA4, ATPI4KGAMMA4 ,PI4K GAMMA 4 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) AT5G24240 73 / 1e-16 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G099000 [exp] 100 / 4e-26 AT2G46500 784 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.001G090300 [exp] 97 / 2e-25 AT2G46500 699 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Potri.012G014600 [exp] 94 / 4e-24 AT5G24240 767 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Potri.015G013600 [exp] 76 / 1e-17 AT5G24240 747 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022411 [exp] 94 / 5e-24 AT5G24240 731 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10018104 [exp] 91 / 6e-23 AT5G24240 689 / 0.0 Phosphatidylinositol 3- and 4-kinase ;Ubiquitin family protein (.1) Lus10004005 [exp] 86 / 2e-21 AT2G46500 483 / 1e-169 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10030251 [exp] 86 / 2e-21 AT2G46500 484 / 3e-170 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10003190 [exp] 86 / 4e-21 AT2G46500 587 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3) Lus10001817 [exp] 86 / 4e-21 AT2G46500 665 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 4, phosphoinositide 4-kinase gamma 4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G171400.2 pacid=42779488 polypeptide=Potri.002G171400.2.p locus=Potri.002G171400 ID=Potri.002G171400.2.v4.1 annot-version=v4.1 ATGGGACCTGCCAGAAGAATATGCGCGCACTCTCCGCTCCTGAAGAAGGGAGTGGAGAGGGGTCTGATCACCCCTTTCACCATTGGTAGTATGATGTGTA GGGAGACCTTGAAGAAGGGATCAGTTATTAAAGAGATTGTCGAAGAAGCAGAGGATTCCGTACTTCCTGTATCAAGTGAAGCTGCTTTCCTTGAAAGAGC ATCACAAATCATGGATCACCGCCTTGATGAGACTGCTGGATCCGCCTAG
AA sequence Show only first row Show all	>Potri.002G171400.2 pacid=42779488 polypeptide=Potri.002G171400.2.p locus=Potri.002G171400 ID=Potri.002G171400.2.v4.1 annot-version=v4.1 MGPARRICAHSPLLKKGVERGLITPFTIGSMMCRETLKKGSVIKEIVEEAEDSVLPVSSEAAFLERASQIMDHRLDETAGSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64460			Protein kinase superfamily pro...		Potri.002G171400 [exp]	0	1
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.008G010201 [exp]	14.66	0.6777
AT3G25020		AtRLP42	receptor like protein 42 (.1)		Potri.011G162101 [exp]	19.69	0.5883
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.010G202500 [exp]	21.21	0.6742	Pt-EXPA4.2,+E2EXPA15
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.014G027100 [exp]	22.18	0.6964	Pt-HSFB4.2
AT1G13380			Protein of unknown function (D...		Potri.008G120900 [exp]	32.49	0.6801
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.011G145100 [exp]	41.91	0.6764
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Potri.011G148000 [exp]	45.51	0.6757	ACT6
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	48.74	0.6662
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.009G107350 [exp]	60.09	0.5662
					Potri.007G146700 [exp]	71.30	0.6129

Compare expression of checked genes

Potri.002G171400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.