Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61790 558 / 0 Protein with RING/U-box and TRAF-like domains (.1) AT4G27880 527 / 0 Protein with RING/U-box and TRAF-like domains (.1) AT3G58040 459 / 5e-164 SINAT2 seven in absentia of Arabidopsis 2 (.1) AT2G41980 453 / 2e-161 Protein with RING/U-box and TRAF-like domains (.1) AT5G53360 417 / 1e-148 TRAF-like superfamily protein (.1) AT3G13672 226 / 3e-73 TRAF-like superfamily protein (.1.2) AT5G37870 102 / 3e-25 Protein with RING/U-box and TRAF-like domains (.1) AT5G37930 100 / 6e-24 Protein with RING/U-box and TRAF-like domains (.1) AT5G37890 95 / 2e-22 Protein with RING/U-box and TRAF-like domains (.1) AT5G62800 92 / 6e-21 Protein with RING/U-box and TRAF-like domains (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G099200 [exp] 613 / 0 AT3G61790 551 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.012G015500 [exp] 568 / 0 AT4G27880 542 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.015G013000 [exp] 561 / 0 AT4G27880 546 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G198600 [exp] 477 / 3e-171 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.T126006 [exp] 477 / 3e-171 AT3G61790 473 / 2e-169 Protein with RING/U-box and TRAF-like domains (.1) Potri.016G059700 [exp] 467 / 3e-167 AT3G58040 548 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.006G194100 [exp] 465 / 3e-166 AT3G58040 560 / 0.0 seven in absentia of Arabidopsis 2 (.1) Potri.001G026200 [exp] 451 / 9e-161 AT3G61790 450 / 2e-160 Protein with RING/U-box and TRAF-like domains (.1) Potri.003G215400 [exp] 434 / 4e-154 AT3G58040 471 / 4e-169 seven in absentia of Arabidopsis 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022405 [exp] 548 / 0 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10018110 [exp] 547 / 0 AT4G27880 553 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10030248 [exp] 532 / 0 AT3G61790 514 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10004001 [exp] 528 / 0 AT3G61790 525 / 0.0 Protein with RING/U-box and TRAF-like domains (.1) Lus10002761 [exp] 462 / 2e-164 AT3G61790 462 / 1e-164 Protein with RING/U-box and TRAF-like domains (.1) Lus10016348 [exp] 457 / 2e-162 AT3G61790 459 / 7e-163 Protein with RING/U-box and TRAF-like domains (.1) Lus10039202 [exp] 447 / 2e-159 AT3G58040 488 / 1e-175 seven in absentia of Arabidopsis 2 (.1) Lus10013739 [exp] 446 / 1e-158 AT3G58040 493 / 6e-178 seven in absentia of Arabidopsis 2 (.1) Lus10009111 [exp] 58 / 1e-09 AT5G37930 134 / 5e-38 Protein with RING/U-box and TRAF-like domains (.1) Lus10028535 [exp] 57 / 2e-09 AT5G37930 134 / 7e-38 Protein with RING/U-box and TRAF-like domains (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF03145 [poplar] [flax] Sina Seven in absentia protein family
Representative CDS sequence Show only first row Show all	>Potri.002G171500.1 pacid=42780044 polypeptide=Potri.002G171500.1.p locus=Potri.002G171500 ID=Potri.002G171500.1.v4.1 annot-version=v4.1 ATGGAATTGGATAGCATTGAATGTGTGCCATCCTTAGATTTAACAGATGAGGATGAGATCCACCATCACCACCATCTTCATCATTTTCCTTCTGTTTCAA AGCCACACACCACCACCACCACCAACAACAACAACAGCAACAGCAATAGTAATACCGTGGCTTCAGCTATACACACTACCAGTGTTCATGAGCTCCTTGA ATGCCCTGTTTGTACCAATTCTATGTACCCTCCTATTCATCAGTGCCACAATGGCCACACACTCTGTTCAACCTGTAAAACACGAGTACAAAATCGGTGC CCCACTTGTAGACAGGAGCTTGGTGACATTAGATGTCTAGCATTGGAAAAAGTAGCTGAATCACTTGAGCTGCCTTGCAAATACATGTCGCTTGGATGCC CAGAGATTTTTCCATACTACAGTAAACTGAAACATGAGACCCTGTGCAATTTTAGGCCATACAGCTGTCCATATGCTGGATCAGAGTGTGCTATTGTCGG GGATATCCCATTCCTTGTCGCTCATCTAAGAGATGATCACAAGGTGGACATGCATTCCGGGTGTACTTTCAACCATCGCTATGTCAAGTCCAATCCTCGT GAAGTAGAAAATGCAACATGGATGTTAACTGTTTTCCACTGTTTTGGCCAGTATTTCTGCCTCCATTTTGAAGCTTTCCAACTCGGGATGGCTCCTGTTT ATATGGCATTCCTCAGATTCATGGGTGATGAGGCAGAGGCCAGGAATTACAGCTACAGCCTGGAGGTTGGGGGAAATGGTCGGAAACTAATTTGGGAAGG CACACCACGGAGTATAAGAGATAGTCACAGGAAGGTTAGGGACAGCCATGATGGACTTATCATACAACGTAACATGGCACTTTTCTTCTCTGGAGGAGAC AGGAAGGAGTTAAAGCTGCGAGTTACAGGACGGATATGGAAAGAACAGCAGAACCCGGAAGGTGGGGCATGCATTCCCAACCTTTGTAGTTAG
AA sequence Show only first row Show all	>Potri.002G171500.1 pacid=42780044 polypeptide=Potri.002G171500.1.p locus=Potri.002G171500 ID=Potri.002G171500.1.v4.1 annot-version=v4.1 MELDSIECVPSLDLTDEDEIHHHHHLHHFPSVSKPHTTTTTNNNNSNSNSNTVASAIHTTSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVQNRC PTCRQELGDIRCLALEKVAESLELPCKYMSLGCPEIFPYYSKLKHETLCNFRPYSCPYAGSECAIVGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPR EVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEAEARNYSYSLEVGGNGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGD RKELKLRVTGRIWKEQQNPEGGACIPNLCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61790			Protein with RING/U-box and TR...		Potri.002G171500 [exp]	0	1
AT1G07060			unknown protein		Potri.001G281500 [exp]	2.82	0.7880
AT2G30933			Carbohydrate-binding X8 domain...		Potri.002G059600 [exp]	4.69	0.8171
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.001G133300 [exp]	6.48	0.7975	PCBERp4
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	8.12	0.7390
AT5G57460			unknown protein		Potri.006G168200 [exp]	15.16	0.7684
AT1G80630			RNI-like superfamily protein (...		Potri.003G179100 [exp]	16.24	0.6954
AT3G60080			RING/U-box superfamily protein...		Potri.001G231000 [exp]	16.91	0.8034
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.007G013900 [exp]	17.54	0.7010	GMD1.1
AT4G39690			unknown protein		Potri.005G080200 [exp]	19.59	0.6432
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.015G128600 [exp]	29.39	0.6922

Compare expression of checked genes

Potri.002G171500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.