Plant FIBer expression Database

Potri.002G171600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61800 623 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G099300
[exp]
1069 / 0 AT3G61800 638 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004000
[exp]
747 / 0 AT3G61800 650 / 0.0 unknown protein
Lus10030247
[exp]
744 / 0 AT3G61800 642 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09740 DUF2043 Uncharacterized conserved protein (DUF2043)
Representative CDS sequence
>Potri.002G171600.1 pacid=42778744 polypeptide=Potri.002G171600.1.p locus=Potri.002G171600 ID=Potri.002G171600.1.v4.1 annot-version=v4.1
ATGGAGATGGAAGAGGATGCGGGAAAAGTGAGGGCGTTGATAGAGAAGGCCACCAATTCCACGGCGGCCCACGTCGACCCCCGCCTCCTCAAAGGCATCA
AAACGGTCGTCCGATACTCTGACTCGGAGCTCCGACTCGCCGCCCAAATCCTAATGGATTTCATGAAACGCGACCACTCCCAGGTTAGGTATTTGACGCT
TCTAATAATTGATGAACTATTTATGCGATCAAAGCTATTTAGAGCTCTAGTTGTTGAGAATTTAGATAAACTATTAAGTTTAAGCGTGGGATTTAGAAGA
AACCATCCGCTTCCTGCTCCACCGGCAGTTGCGTCCGTTTTGCGTTTAAAAGCGATTGAATTCTTGGAGAAATGGAATTCTTCTTTTGGAATTCATTACA
GACAGATTAGATTAGGTTTTGATTACCTTAAAAACACGCTCCGGTTTCAGTTTCCAAATGTTCAGGCCAATGCAGCACGAGTTCAGCAAGAGAGGAGGGA
AAGGGAGATGAGGACGAAAGAGATCCTAGTTAACAAGTTTGAGGCTTTGAAGGAGAATTTATCCTCGTTGAAGGAGGAAATTCGGGAAACTGTTGATGAG
ATTGGGGAGTGTTTAGAGATTGTTAAGAATAAAGAGGAGAATGTGGTGATTGGCGCTTTAGATGACGATGAGGATTTTGAAGAGTTTCATCCTTTGGAGT
TGCGTCAGCTCCGGCTTGATTCGTTGAAAGAGGGGGAGAAGGTCTGCGAGAATAGTGAGAATAAAGTGGTTTTCGATGCATTGAGGGAGTTGTACAAGCT
CTTAGTGACAAAGCATTTGGTTTCGGTCCAAGAAGGAATCTCTATTCTAATCAGGGTTGAAGTGGAAGATTTGAGATTAAGAGATTCTATGCTCAAGGAG
TTCATTGACATCCGAAATCACCTTCAATCAATGAAGAAGAAATGTGTTGAATCAGGTTGCGTTCTTCCAGACATTACAAAGCATGACAAAGAAGAGGAAG
AAGATTTTTGGGAGGAGGGTAAGGTTGAATCAACTGGCCTTGGGAGTTTTAGTGAACCCATTAAGCGATCTGAAAACTCTTCTGCACCATCAACTTCTGG
AGAGGTGAAAAATGAACCTTCTGAATGCAGTACTGAGAAGTCGAAACGTGATGGGTCTCCGGGTCGTGAAGGTGGTGGAACTGATTCCAGCTCTCTTCGA
AGTAAGCTCATGGCTGAAGCTCCAGTGATAGAGTGGGGCTCTTTTTTGGACACTTGGGGTTCAAACAGGGATGTTTTAGCCAACCACAGGGGCTTGGAGC
TTGAAAGTCACTGGGGTAGGGTGGACCATGATGCAGTTATTCCAGCAAAGAAAATTGCTGAATTGAACCTTCAGGCAACTCTTTACAAAGAAGACCGAGT
TGAAACCCAGCCATGTCGAGCTCCATTACGGAAGGGTGGACTCTGTCAGAGAAGAGATTTGAGAGTTTGCCCCTTTCACGGACCCATCATTCCCCGTGAC
GATGAAGGAAATCCTATCAACCAGGACACTTCAACTAGTGACGTGACTCTTGATTTAGGGACTGATTTAGTAGAGCAATTAGCCAAAGAAGCTGCGAAGA
ATGTTTGGGACAGAGATAATGAGGAAGCAAGGAAAAGAAAAATGGACAAACATTCACAGCAACGAGCTAGGCTTGCAAAGATACGAGAACATAATCAAGC
TGTTCTGAGGGATGCTGCAGTGGCTTCAAATTCTGGATCTTCAGGTATTGGGGACGATGTCGAGGCATCGAGGAGGGACAGTTTGTTGGCTAGAAACAAA
ATGGAAACTCTCGCGTCAATGTTGCACAAGAAAGTAACCACCAAAGATAGGTTGTCTCGGAGACTTTTGAATACCAGGGCAAGTGATGCAATGACAAGGC
AGCTTACACTGGGAGAAGATGCTAATTATAGAGAAGCCTTTCCAAATCAATGGTAG
AA sequence
>Potri.002G171600.1 pacid=42778744 polypeptide=Potri.002G171600.1.p locus=Potri.002G171600 ID=Potri.002G171600.1.v4.1 annot-version=v4.1
MEMEEDAGKVRALIEKATNSTAAHVDPRLLKGIKTVVRYSDSELRLAAQILMDFMKRDHSQVRYLTLLIIDELFMRSKLFRALVVENLDKLLSLSVGFRR
NHPLPAPPAVASVLRLKAIEFLEKWNSSFGIHYRQIRLGFDYLKNTLRFQFPNVQANAARVQQERREREMRTKEILVNKFEALKENLSSLKEEIRETVDE
IGECLEIVKNKEENVVIGALDDDEDFEEFHPLELRQLRLDSLKEGEKVCENSENKVVFDALRELYKLLVTKHLVSVQEGISILIRVEVEDLRLRDSMLKE
FIDIRNHLQSMKKKCVESGCVLPDITKHDKEEEEDFWEEGKVESTGLGSFSEPIKRSENSSAPSTSGEVKNEPSECSTEKSKRDGSPGREGGGTDSSSLR
SKLMAEAPVIEWGSFLDTWGSNRDVLANHRGLELESHWGRVDHDAVIPAKKIAELNLQATLYKEDRVETQPCRAPLRKGGLCQRRDLRVCPFHGPIIPRD
DEGNPINQDTSTSDVTLDLGTDLVEQLAKEAAKNVWDRDNEEARKRKMDKHSQQRARLAKIREHNQAVLRDAAVASNSGSSGIGDDVEASRRDSLLARNK
METLASMLHKKVTTKDRLSRRLLNTRASDAMTRQLTLGEDANYREAFPNQW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G61800 unknown protein Potri.002G171600
[exp]
0 1
AT5G57610 Protein kinase superfamily pro... Potri.006G170700
[exp]
6.92 0.7917
AT5G57610 Protein kinase superfamily pro... Potri.018G095800
[exp]
9.00 0.8200
AT3G03140 Tudor/PWWP/MBT superfamily pro... Potri.019G048100
[exp]
11.87 0.7481
AT2G35940 HD BLH1, EDA29 embryo sac development arrest ... Potri.009G017400
[exp]
12.16 0.8148
AT4G31040 CemA-like proton extrusion pro... Potri.018G150000
[exp]
13.82 0.8262
Potri.002G115600
[exp]
18.70 0.8225
AT1G13940 Plant protein of unknown funct... Potri.010G162000
[exp]
21.21 0.7934
AT5G27330 Prefoldin chaperone subunit fa... Potri.005G040500
[exp]
26.68 0.7573
AT3G16290 EMB2083 embryo defective 2083, AAA-typ... Potri.003G050600
[exp]
32.86 0.8143
AT3G14830 unknown protein Potri.003G026500
[exp]
33.04 0.7462

Potri.002G171600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.