Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01300 642 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G61820 573 / 0 Eukaryotic aspartyl protease family protein (.1) AT3G18490 375 / 2e-125 Eukaryotic aspartyl protease family protein (.1) AT1G25510 370 / 4e-124 Eukaryotic aspartyl protease family protein (.1) AT3G20015 349 / 6e-116 Eukaryotic aspartyl protease family protein (.1) AT5G10770 249 / 6e-77 Eukaryotic aspartyl protease family protein (.1) AT5G10760 245 / 1e-75 Eukaryotic aspartyl protease family protein (.1) AT2G42980 235 / 3e-71 Eukaryotic aspartyl protease family protein (.1) AT2G03200 234 / 3e-71 Eukaryotic aspartyl protease family protein (.1) AT3G59080 234 / 1e-70 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G099400 [exp] 762 / 0 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 382 / 2e-128 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 374 / 3e-125 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 364 / 3e-121 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 358 / 5e-119 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 272 / 7e-86 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.005G204600 [exp] 274 / 1e-85 AT3G59080 686 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.018G014900 [exp] 244 / 4e-75 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 244 / 5e-75 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003999 [exp] 668 / 0 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 494 / 1e-173 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 325 / 2e-106 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 303 / 1e-97 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 301 / 1e-96 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 271 / 2e-83 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 265 / 2e-83 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10007335 [exp] 255 / 1e-78 AT3G59080 698 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10041151 [exp] 238 / 4e-73 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 235 / 8e-72 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.002G171700.1 pacid=42780078 polypeptide=Potri.002G171700.1.p locus=Potri.002G171700 ID=Potri.002G171700.1.v4.1 annot-version=v4.1 ATGGAAGGAAAAGCAAGAAATGCTCCTGCTCTCCTTTTCTTTTCCTTCACCTGCGTTTTCCTTTCCCTCTCCACTACCACTCTCTCGACTTCACCGCAGT TCCAAACCCTAACCGTCAACCCCCTCCCTAACAAGCCCACTCTCTCATGGGCCGACACCGGACCCGAATCCGAACCCGAGACTCAAACCCTCACCGACTC AACCTCAACAGAAGCCTCCACCACCACTTCCCTTTCCGTACAGCTACACCACTTAGATGCCTTGTCTTCGGACGAAACCCCACAAGATCTTTTCAACTCG AGGCTCGCACGTGATGCCTCACGTGTCAAATCCTTGACATCTCTTGCTGCAGCCGTTGGCAGTACAAACAGGACTCGTGCTCGCGGCCCTGGGTTCAGTA GTTCTGTAACATCAGGACTCGCTCAAGGGAGTGGCGAGTACTTCACGCGCCTCGGTGTAGGGACACCAGCAAGATATGTCTTCATGGTGCTCGACACTGG AAGCGACGTCGTTTGGATCCAGTGTGCTCCGTGCAAAAAATGTTACTCTCAAACCGACCCGGTTTTTAACCCGACTAAATCCAGATCCTTCGCCAACATC CCCTGCGGGTCACCCTTGTGTAGGAGACTTGATTCTCCAGGTTGCAGCACGAAGAAACAGATTTGTCTCTATCAGGTCTCTTACGGCGACGGGTCCTTCA CTTACGGTGAGTTCTCAACCGAAACGCTGACGTTTCGAGGCACTAGAGTTGGGCGTGTGGCGCTTGGTTGTGGGCATGATAATGAAGGGCTTTTCATTGG TGCTGCTGGGTTGCTGGGACTTGGAAGGGGTAGATTATCATTTCCTTCCCAAATTGGTCGCCGGTTCAGCCGGAAGTTCTCTTATTGCTTGGTGGACCGG TCTGCTTCTTCTAAACCGTCTTATATGGTTTTTGGCGACTCGGCTATTTCAAGAACCGCTCGGTTCACTCCATTGGTGTCCAACCCGAAATTAGACACCT TTTACTATGTTGAGCTTCTTGGGGTTAGTGTTGGTGGGACGCGTGTCCCTGGGATCACAGCTTCTTTATTCAAACTTGACTCGACAGGGAATGGTGGAGT TATAATTGATTCGGGCACGTCAGTTACCCGGTTGACCCGGCCCGCTTATGTGGCTCTGCGCGATGCTTTCCGGGTCGGAGCATCCAATTTGAAACGGGCA CCGGAATTCTCATTGTTTGACACGTGTTTTGATCTATCTGGGAAGACAGAGGTGAAGGTGCCAACGGTGGTTTTACATTTTAGAGGTGCTGACGTATCAT TACCGGCGTCGAACTATTTGATACCAGTGGACAATAGTGGGAGTTTCTGCTTTGCGTTTGCGGGTACAATGAGTGGATTGTCGATAGTCGGGAATATCCA ACAACAAGGTTTCCGGGTTGTATACGACTTGGCGGCCTCACGGGTCGGATTTGCTCCCCGTGGATGTGCTTGA
AA sequence Show only first row Show all	>Potri.002G171700.1 pacid=42780078 polypeptide=Potri.002G171700.1.p locus=Potri.002G171700 ID=Potri.002G171700.1.v4.1 annot-version=v4.1 MEGKARNAPALLFFSFTCVFLSLSTTTLSTSPQFQTLTVNPLPNKPTLSWADTGPESEPETQTLTDSTSTEASTTTSLSVQLHHLDALSSDETPQDLFNS RLARDASRVKSLTSLAAAVGSTNRTRARGPGFSSSVTSGLAQGSGEYFTRLGVGTPARYVFMVLDTGSDVVWIQCAPCKKCYSQTDPVFNPTKSRSFANI PCGSPLCRRLDSPGCSTKKQICLYQVSYGDGSFTYGEFSTETLTFRGTRVGRVALGCGHDNEGLFIGAAGLLGLGRGRLSFPSQIGRRFSRKFSYCLVDR SASSKPSYMVFGDSAISRTARFTPLVSNPKLDTFYYVELLGVSVGGTRVPGITASLFKLDSTGNGGVIIDSGTSVTRLTRPAYVALRDAFRVGASNLKRA PEFSLFDTCFDLSGKTEVKVPTVVLHFRGADVSLPASNYLIPVDNSGSFCFAFAGTMSGLSIVGNIQQQGFRVVYDLAASRVGFAPRGCA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01300			Eukaryotic aspartyl protease f...		Potri.002G171700 [exp]	0	1
AT2G35585			unknown protein		Potri.008G140000 [exp]	2.82	0.8452
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.018G044900 [exp]	12.96	0.7783
AT3G54000			unknown protein		Potri.010G195800 [exp]	13.11	0.8187
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.001G356500 [exp]	14.69	0.8042
AT1G21090			Cupredoxin superfamily protein...		Potri.005G192800 [exp]	16.30	0.7892
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.005G176700 [exp]	18.16	0.8157
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.002G084800 [exp]	21.21	0.8399
AT5G22930			Protein of unknown function (D...		Potri.008G032500 [exp]	23.97	0.7779
AT1G70280			NHL domain-containing protein ...		Potri.010G094200 [exp]	24.91	0.8231
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Potri.003G104700 [exp]	32.18	0.8153

Compare expression of checked genes

Potri.002G171700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.