Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00980 373 / 5e-125 zinc knuckle (CCHC-type) family protein (.1) AT4G10920 144 / 5e-41 KELP transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) AT5G09250 65 / 7e-13 KIWI ssDNA-binding transcriptional regulator (.1.2) AT5G09240 52 / 2e-08 ssDNA-binding transcriptional regulator (.1.2.3) AT5G42060 47 / 1e-06 DEK, chromatin associated protein (.1) AT1G64490 40 / 0.001 DEK, chromatin associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089400 [exp] 127 / 9e-35 AT4G10920 152 / 5e-48 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Potri.007G101100 [exp] 64 / 2e-12 AT5G09250 115 / 7e-35 ssDNA-binding transcriptional regulator (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003998 [exp] 293 / 4e-93 AT4G00980 226 / 9e-68 zinc knuckle (CCHC-type) family protein (.1) Lus10030245 [exp] 161 / 3e-47 AT4G10920 136 / 3e-41 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10032410 [exp] 107 / 4e-27 AT4G10920 169 / 2e-54 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10023061 [exp] 75 / 1e-15 AT4G10920 132 / 7e-40 transcriptional coactivator p15 (PC4) family protein (KELP) (.1), transcriptional coactivator p15 (PC4) family protein (KELP) (.2) Lus10013733 [exp] 67 / 2e-13 AT5G09250 139 / 2e-44 ssDNA-binding transcriptional regulator (.1.2) Lus10039207 [exp] 59 / 8e-11 AT5G09250 125 / 1e-38 ssDNA-binding transcriptional regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0609 [poplar] [flax] sPC4_like PF02229 [poplar] [flax] PC4 Transcriptional Coactivator p15 (PC4) CL0609 [poplar] [flax] PF08766 [poplar] [flax] DEK_C DEK C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G171900.1 pacid=42779302 polypeptide=Potri.002G171900.1.p locus=Potri.002G171900 ID=Potri.002G171900.1.v4.1 annot-version=v4.1 ATGGACCCAGAGCTCCAGCGGAAAATCCAGGAAACAGTAATTGACATACTAAAACACGCTAGCATGGACGAAATCACTGAATTCAAAGTTCGAGCCACCG CCACTGAGCGACTCGACTTCGATTTGTCCCATATCGAACACAAGAAATTTATCAGAGGCGTTATCGAGTCCTTTTTGCTCTCTACCATGGACGAGGAAGG TAAAGAAGCCAATGGAAACGTAAGAGAAGACACTAAGGAAGCACTGCAAGAAGAACACGAGGAAGTGTTGACTAAGAAGGAGGTTGGTACTGATGGTAAT CGCGTTATTTGTAAGCTATCAGAGAGAAGAAGCGTGACGATTCAAGAATTTAAAGGGAAATCATTCGTGTCGATAAGGGACTTTTATCAGAAAGATGGAA ACCTGCTTCCTTCTAAAATAGGAATTTGCTTGACATCTGAACAATGGACAGCCATCAAGCAAAATGTGCCTGCAATAGAGGAAGCCATTGCGAAGATGCA ATCAATGTTAAGTTCTGGCCTTGATGTTGAACAAAATGGACAAATCTCTAAGCCAGTGGCTGATTCTATTTCTCAAGAACTCCCCCTCGAGATTTCTCGT ATTGAGGTCAGCCGTTTTGATGGGAAGAATTATCAGTTCTGGGCACCACAGATGGAATTTTTCTTGAAGCAATTAAAGATTGTGTATGTGCTTACTGTCC CTCGCCCAAGCATTGCTACAAGCCCACCGGCCAGTGCTGAAGAAATTGCTCAAGCCAAAGCTACAGAGCAAAAGTGGTGCAATGATGACCATCTCTGTCG CCTCAACATTTTGAATTCTCTATCTGATTCTATTTATTACAAGTATGCAAAGAAGATTAAGACTGCCAAGGAACTATGGGAAGACCTGAAATTGGTTTAC CTTTATGATGAGTTTGGAACAAAGAGATCTCAAGTTAAAAAGTACATTGAATTTCAAATGGTTGATGAGAAATCGATTTTTGACCAACTTCAGGAACTTA ATGGCATTGCAGATGCAATTGTTGCTGCAGGAATGTTTATTGATGAGAACTTTCATGTTAGCACTGTCATTTCCAAGCTTCCTCCATCTTGGAAGGACTT CTGCATGAAGTTGATGCATGAGGAGTATCTTCCTTTCTGGATATTAATGGACCGTGTAAGGGCCGAGGAAGAGTCTCGCAATCAAGATAAGTTAGGGGAG CCCTCCAGTCATGTACATTCACATCATCCCAAGTATCTTGGACCTAGGATCAGAGATATGAAGAAGCCAGGGTTGCATTGGAAGAGACGAGATATAGAGG TAGATAATAACAAGTCCTTGACATGCTACTTTTGCGGGAAGAAGGGACACATTTCTAAACACTGTCCTGATAAAAAGTTTGACAGGGGAGCTAGTGAGAA GCATGGCAAGGAAAACTCATCTGCACCTGCAGTTACAGAGGTGAACATAGAGCACTGCAGTAACTAA
AA sequence Show only first row Show all	>Potri.002G171900.1 pacid=42779302 polypeptide=Potri.002G171900.1.p locus=Potri.002G171900 ID=Potri.002G171900.1.v4.1 annot-version=v4.1 MDPELQRKIQETVIDILKHASMDEITEFKVRATATERLDFDLSHIEHKKFIRGVIESFLLSTMDEEGKEANGNVREDTKEALQEEHEEVLTKKEVGTDGN RVICKLSERRSVTIQEFKGKSFVSIRDFYQKDGNLLPSKIGICLTSEQWTAIKQNVPAIEEAIAKMQSMLSSGLDVEQNGQISKPVADSISQELPLEISR IEVSRFDGKNYQFWAPQMEFFLKQLKIVYVLTVPRPSIATSPPASAEEIAQAKATEQKWCNDDHLCRLNILNSLSDSIYYKYAKKIKTAKELWEDLKLVY LYDEFGTKRSQVKKYIEFQMVDEKSIFDQLQELNGIADAIVAAGMFIDENFHVSTVISKLPPSWKDFCMKLMHEEYLPFWILMDRVRAEEESRNQDKLGE PSSHVHSHHPKYLGPRIRDMKKPGLHWKRRDIEVDNNKSLTCYFCGKKGHISKHCPDKKFDRGASEKHGKENSSAPAVTEVNIEHCSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00980			zinc knuckle (CCHC-type) famil...		Potri.002G171900 [exp]	0	1
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.008G058700 [exp]	1.00	0.8966
AT3G07870			F-box and associated interacti...		Potri.001G396800 [exp]	3.46	0.8853
AT5G05800			unknown protein		Potri.001G268908 [exp]	4.24	0.8823
AT4G02720			unknown protein		Potri.002G051500 [exp]	6.92	0.8916
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	7.14	0.8855
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	7.74	0.8826
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.005G248500 [exp]	9.00	0.8639	Ptr4CL14
AT2G33580			Protein kinase superfamily pro...		Potri.008G160600 [exp]	9.53	0.8586
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	9.94	0.8600
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Potri.009G046800 [exp]	10.95	0.8719

Compare expression of checked genes

Potri.002G171900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.