Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49250 311 / 1e-103 IDN1, DMS3 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) AT5G24280 137 / 3e-35 GMI1 gamma-irradiation and mitomycin c induced 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G012600 [exp] 379 / 3e-130 AT3G49250 435 / 3e-151 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016000 [exp] 378 / 7e-130 AT3G49250 426 / 8e-148 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Potri.012G016100 [exp] 170 / 1e-46 AT5G24280 1107 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023253 [exp] 339 / 1e-114 AT3G49250 359 / 7e-122 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008855 [exp] 297 / 2e-98 AT3G49250 345 / 2e-116 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10030244 [exp] 282 / 6e-93 AT3G49250 241 / 2e-76 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10003997 [exp] 269 / 3e-88 AT3G49250 226 / 7e-71 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10008854 [exp] 253 / 3e-82 AT3G49250 289 / 1e-95 INVOLVED IN DE NOVO 1, defective in meristem silencing 3 (.1) Lus10022400 [exp] 156 / 6e-42 AT5G24280 1270 / 0.0 gamma-irradiation and mitomycin c induced 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G172000.4 pacid=42778885 polypeptide=Potri.002G172000.4.p locus=Potri.002G172000 ID=Potri.002G172000.4.v4.1 annot-version=v4.1 ATGGGTCACAAGATGGACTCTCTTAGAAGGTTAACGGATAATTTTGAGAGCCCGATAAAAGATATCAAAAGGCATGAAGACAACCTAAAATTTTTGAAGT CGCAAGCAAATCATTTAGATGAATCTATACTTGATCTGCAAGTGAGGCTTGGAAAGTATCATTCCAAAGATGCAGCAAGTGAAAACAATGACCTTCACCC TGAGGAAGAATCAACACAACAGATATTACACCAAGAGCAATCTGCAGCTGGTATATTGTGCAAGGTAAAATCTTATCATGCAATTCACGCATCGAATTTG TCATTGATCAAGGATGTGCTGGGTATTGTGGCTACTCTTGCCAGAGTTGATAATGATACTCTTAGTAGGCTTCTCTCAGAGTACTTGGGATTGGAGACTA TGCTGGGAATAGTCTGCAAAACATTCGATGGAATTAAGGCTTTAGAGAAGTATGATGGAAATGGCAAAATAAAAGACATAGCTGGTCTGCATGGTCTTGG ATCTTCAATTGGGAGGAAAATTGATGGTCGATTTACTGCATTTTGCCTTGAAGATTTGAGGCCATTTGCGGGCGGTTTTATAGCCAATGATCCACAAAAG AAACTTGCTCTTTTAAAGCCGAAGTTACCAGATGGGAAGTGTCCTTCTGGATTTCTTGACTTCGTGGTGAACATGGTCAATCTGGATGATCGGAACTTGT TTTGTGTTACTGCTGGTGGACATGGTCTTAGAGAGACATTATTCTATAACCTATTTTCTTACCTGCAAGTATACAAGACTAGAGCTGACATGCTTTCTGC TCTCCCATGCATAACTCATGGAGCCCTGTCTTTAGATGGTGGGATGATCACGAAAAATGGTCTCTTTTTACTTGGCAGCAGGGAAAATTTTGAGGTGAAA TTCCCATTGATCACTGGGAGATCTGGTTTGTCTTTGAATTATAGTCAAATTGAAACTAGGATCAGGAAGTTGAGATGGGAACAGCATAATATTGAGCAGG ATATGCTAAGAGAACAGCAGTTGTTGGATAAAGCTAGGGCTGCTTCTTCAGGCAAGCCACAAGTATGA
AA sequence Show only first row Show all	>Potri.002G172000.4 pacid=42778885 polypeptide=Potri.002G172000.4.p locus=Potri.002G172000 ID=Potri.002G172000.4.v4.1 annot-version=v4.1 MGHKMDSLRRLTDNFESPIKDIKRHEDNLKFLKSQANHLDESILDLQVRLGKYHSKDAASENNDLHPEEESTQQILHQEQSAAGILCKVKSYHAIHASNL SLIKDVLGIVATLARVDNDTLSRLLSEYLGLETMLGIVCKTFDGIKALEKYDGNGKIKDIAGLHGLGSSIGRKIDGRFTAFCLEDLRPFAGGFIANDPQK KLALLKPKLPDGKCPSGFLDFVVNMVNLDDRNLFCVTAGGHGLRETLFYNLFSYLQVYKTRADMLSALPCITHGALSLDGGMITKNGLFLLGSRENFEVK FPLITGRSGLSLNYSQIETRIRKLRWEQHNIEQDMLREQQLLDKARAASSGKPQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.002G172000 [exp]	0	1
AT5G15080			Protein kinase superfamily pro...		Potri.004G129000 [exp]	2.64	0.9084
AT4G38280			unknown protein		Potri.004G205200 [exp]	3.87	0.8757
AT1G10180			unknown protein		Potri.015G119300 [exp]	6.92	0.8792
AT5G67130			PLC-like phosphodiesterases su...		Potri.005G140100 [exp]	7.93	0.8528
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	8.12	0.8908	ALDH22.1
AT5G10080			Eukaryotic aspartyl protease f...		Potri.005G079900 [exp]	8.48	0.8593
AT5G22400			Rho GTPase activating protein ...		Potri.009G162900 [exp]	8.77	0.8593
AT5G10150			Domain of unknown function (DU...		Potri.005G078300 [exp]	9.79	0.8703
AT2G25270			unknown protein		Potri.006G258700 [exp]	12.96	0.8721
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	13.52	0.8832

Compare expression of checked genes

Potri.002G172000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.