Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46520 1421 / 0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) AT3G59020 69 / 2e-11 ARM repeat superfamily protein (.1.2) AT1G26170 57 / 6e-08 ARM repeat superfamily protein (.1) AT2G31660 56 / 1e-07 EMA1, URM9, SAD2 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) AT3G08960 44 / 0.001 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100000 [exp] 1769 / 0 AT2G46520 1464 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Potri.014G149600 [exp] 67 / 4e-11 AT2G31660 1543 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.002G232600 [exp] 66 / 1e-10 AT2G31660 1499 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Potri.T108626 [exp] 64 / 4e-10 AT1G26170 1345 / 0.0 ARM repeat superfamily protein (.1) Potri.008G109300 [exp] 64 / 6e-10 AT1G26170 1339 / 0.0 ARM repeat superfamily protein (.1) Potri.016G119900 [exp] 49 / 3e-05 AT3G08960 1547 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030241 [exp] 1424 / 0 AT2G46520 1438 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005968 [exp] 1057 / 0 AT2G46520 1073 / 0.0 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030434 [exp] 463 / 7e-154 AT2G46520 449 / 6e-149 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030423 [exp] 357 / 6e-113 AT2G46520 398 / 6e-129 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10026635 [exp] 325 / 2e-98 AT2G46520 363 / 3e-113 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10005969 [exp] 254 / 2e-78 AT2G46520 250 / 2e-77 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10030433 [exp] 187 / 1e-52 AT2G46520 212 / 5e-62 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative (.1) Lus10026726 [exp] 82 / 2e-15 AT2G31660 1084 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10025509 [exp] 80 / 6e-15 AT2G31660 1591 / 0.0 UNARMED 9, SUPER SENSITIVE TO ABA AND DROUGHT2, enhanced miRNA activity 1, ARM repeat superfamily protein (.1) Lus10007842 [exp] 51 / 5e-06 AT3G08960 1493 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF03378 [poplar] [flax] CAS_CSE1 CAS/CSE protein, C-terminus CL0020 [poplar] [flax] TPR PF03810 [poplar] [flax] IBN_N Importin-beta N-terminal domain CL0020 [poplar] [flax] TPR PF08506 [poplar] [flax] Cse1 Cse1
Representative CDS sequence Show only first row Show all	>Potri.002G172700.1 pacid=42778933 polypeptide=Potri.002G172700.1.p locus=Potri.002G172700 ID=Potri.002G172700.1.v4.1 annot-version=v4.1 ATGGAATACAATCCAGAGTTCCTCTCTCGATGTTTCCTCCACACACTCTCTCCACAACCCGAACCTCGCCGCGCCGCCGAATCCAAACTCACCGAACTTG CCAACCACCCTAACTACGCCCTCGCCGTCCTCCGCCTCGTAGCTGAACAGTCAATCGACGAACAGATCCGCCACGCCGCCGCTGTCAACTTCAAAAACCA CCTCCGCTCCCGGTGGGTTCCATCTCTCGATTCCTCCTTCACTCCAATCCTCGACTCCGAAAAGGACCAAATCAAAATCCTTATTGTCAATCTCATGCTC TCCTCTACTCCTCGAATCCAATCTCAGCTCAGCGAATCGCTCTCTCTTATTGGACAACACGATTTCCCTAAATCCTGGCCCACTTTGCTGCCTGAACTCG TGTCAAATCTGCGAGCCGCTTCGCAATCCGATAATTATGCTTCAATTAATGGTATTCTCGGTACTGCTAATTCCATTTTTAAGAAGTTTCGTTATCAGTA CAAAACGAACGATCTCTTAATTGATTTAAAGTATTGTTTGGATAATTTCTCCGCTCCATTGCTAGAAATGTTCCTTAGGACAGCGGCTTTGATAGATTCC ATGGTTGGTTCAGGTGGGGGGTCTCCGGTTACTCTAAAGCCGCTGTTTGAGTCACAGAGATTGTGTTGTAGAGTATTTTATTCATTGAATTTTCAAGAGT TGCCCGAGTTTTTTGAGGATCATATGAAAGAGTGGATGACTGAATTTAAGAAATATTTAGTGAATAACTATCCTGTGCTGGAGAGTAGTGCGGAAGGATT AGGTCTGGTTGATGAGCTTAGGGCTGCGGTATGCGAGAATATTAGTCTTTATATGGAGAAAAATGAGGAGGAGTTTAAGGATTATTTGAATGATTTTGCT CAAGCAGTTTGGACTTTGTTAGGGAAAGTGTCCCAGTCTTCGAGTCGTGATAGTTTAGCTGTTATGGCTATTAAGTTTTTGACTACGGTGAGTACCAGTG TTCATCATACTTTGTTTGCAGGTGATGGGGTTATACCACAGATTTGCCAAAGTATTGTGATTCCTAATGTGAGGTTGAGGGATGAGGATGAGGAACTTTT TGAGATGAATTATATTGAGTTTATTAGGAGGGATATGGAAGGGAGTGATGTAGATACTAGGAGAAGGATTGCCTGTGAGTTACTTAAAGGGATTGCAACA AATTATAAGCAGCAGGTGATCAGTATAGTTTCTGTTCAGATTCAGAATTTGTTGACTTCGTATGCTGCAAACCCAGCTGCAAACTGGAAGGACAAGGATT GTGCAATATATTTGGTTGTTTCCCTTTCAACTAAGAAGACCGGAGGTAATTCTGTTTCAACTGATCTTGTTGATGTTCAGAGCTTTTTTGGGTCGGTAAT TGTGCCTGAGTTGCAGAGTCAGGATGTAAATGCTTTTCTGATGCTCAAGGCTGGTGCTCTTAAATTCTTTACAATGTTTAGGAATCAGATACCAAAGCAT CTTGTACTTCAGCTGTTTCCATATTTGACTCAATTCCTAGGTGCAGAGTCAAATGTGGTTCATTCTTACGCTGCAAGTTGTATAGAGAAACTCTTGTTGG TCAAGGACGAGGGGGGAAGATCAAGGTACACCTCGGCAGATGTAGCTCCAAATCTGCCAGTGCTGATGAATAACCTCTTTACTGCCTTAAGGTTTCCAGA GTCTGAGGAGAATCAATACATAATGAAGAGTATCATGCGGGTTCTAGGGGTTGCAGAAATAACTCCTGAGATTGCAGGACCTTGCATTGCTGGATTGACT TCTATTCTGGCTGAAGTTTGCAAGAATCCAAAGAATCCAATTTTCAATCACTATCTCTTTGAGTCAGTGGCTGTTCTTGTAAGGCGGGCATGTGAGAGAG ATATCTCTCTCATACCATCTTTTGAAACTAGCCTGTTTCCTATACTCCAGGAGATCTTGGGAAATGATGTGACTGAGTTTTTGCCTTATGCGTTCCAGCT CTTGGCTCAACTTGTTGAGTTGAATAGACCACCCATCTCAGATATTTACATGGAAATTTTTAAACTTCTCCTGTCTCCTGATTCATGGACCAGAAATTCA AATGTCCCAGCCCTTGTGCGTCTCCTTCAGGCTTTCCTTGAGAAAGCACCTGAAAAGCTCAACCAAGAAGAGAGACTAGCCCAGGTGCTTGGCATATTTA ACAGGCTTGTGTCAGTCCCTAGCACTGATGAACAAGGCTTCTTTGTGCTGAACACTGTTATTGAGAATCTTGACTATGGAGCCATTGCTCCCTATGTTGG TCACATATGGAATGCCCTATTCACACGCTTGCAAAGTAAACGCACAGTAAAGTATATCAAGTCTCTTTTGATCTTCATATCACTCTTTTTGGTCAAGCAT GGCTTTGCAAACCTTGTGGACTCTATGAATTCAGTGCAAGCTGGTATATTTTTGGTGATTTTGGAGCAGTTCTGGATACCTAATCTCAAGCTGATCACGG GGCCCATTGAGGTTAAGTTAGTATCGGTTGCCTCAACCCGGCTTATCTGTGAATCTCTTACCCTTTTGGATGCTGGGGCTGTTAGAAACTGGGGGAAAAT GCTGGACAGTATTGTAACTCTCCTCTCACGACCAGAGGAGGATAGAGTTGGAGATGAACCAGAAATGCCAGATATTGCTGAAAATACAGGTTATACTGTT GCATTTGTCAATCTTTACAATGCTGGAAAGAAGGAGGAGGATCCTCTGAAGGACATAAAAGATCCTAGGGAATTCTTAGCTACTTCATTAGCGAAGCTTT CTGCACTTTCCCCTGGGAGATTTCCCCAGATCATCAGTGAAAATCTTGATCCAGCAAATCAAGCAGCATTGCACCAGATTTGCAGCACTTACAATTGCCC AGTTGTTTGA
AA sequence Show only first row Show all	>Potri.002G172700.1 pacid=42778933 polypeptide=Potri.002G172700.1.p locus=Potri.002G172700 ID=Potri.002G172700.1.v4.1 annot-version=v4.1 MEYNPEFLSRCFLHTLSPQPEPRRAAESKLTELANHPNYALAVLRLVAEQSIDEQIRHAAAVNFKNHLRSRWVPSLDSSFTPILDSEKDQIKILIVNLML SSTPRIQSQLSESLSLIGQHDFPKSWPTLLPELVSNLRAASQSDNYASINGILGTANSIFKKFRYQYKTNDLLIDLKYCLDNFSAPLLEMFLRTAALIDS MVGSGGGSPVTLKPLFESQRLCCRVFYSLNFQELPEFFEDHMKEWMTEFKKYLVNNYPVLESSAEGLGLVDELRAAVCENISLYMEKNEEEFKDYLNDFA QAVWTLLGKVSQSSSRDSLAVMAIKFLTTVSTSVHHTLFAGDGVIPQICQSIVIPNVRLRDEDEELFEMNYIEFIRRDMEGSDVDTRRRIACELLKGIAT NYKQQVISIVSVQIQNLLTSYAANPAANWKDKDCAIYLVVSLSTKKTGGNSVSTDLVDVQSFFGSVIVPELQSQDVNAFLMLKAGALKFFTMFRNQIPKH LVLQLFPYLTQFLGAESNVVHSYAASCIEKLLLVKDEGGRSRYTSADVAPNLPVLMNNLFTALRFPESEENQYIMKSIMRVLGVAEITPEIAGPCIAGLT SILAEVCKNPKNPIFNHYLFESVAVLVRRACERDISLIPSFETSLFPILQEILGNDVTEFLPYAFQLLAQLVELNRPPISDIYMEIFKLLLSPDSWTRNS NVPALVRLLQAFLEKAPEKLNQEERLAQVLGIFNRLVSVPSTDEQGFFVLNTVIENLDYGAIAPYVGHIWNALFTRLQSKRTVKYIKSLLIFISLFLVKH GFANLVDSMNSVQAGIFLVILEQFWIPNLKLITGPIEVKLVSVASTRLICESLTLLDAGAVRNWGKMLDSIVTLLSRPEEDRVGDEPEMPDIAENTGYTV AFVNLYNAGKKEEDPLKDIKDPREFLATSLAKLSALSPGRFPQIISENLDPANQAALHQICSTYNCPVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46520			cellular apoptosis susceptibil...		Potri.002G172700 [exp]	0	1
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	4.69	0.6874
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Potri.019G000900 [exp]	12.00	0.6472
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	13.96	0.5717	Pt-TOPP1.1
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	22.84	0.6169
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	24.33	0.6271
AT3G51010			unknown protein		Potri.007G018300 [exp]	24.55	0.6584
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Potri.012G071700 [exp]	32.72	0.5478	CDPK1.3
AT5G47455			unknown protein		Potri.001G333800 [exp]	35.91	0.6402
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Potri.010G185100 [exp]	36.27	0.5807
AT3G49710			Pentatricopeptide repeat (PPR)...		Potri.014G012500 [exp]	38.78	0.6000

Compare expression of checked genes

Potri.002G172700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.