Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46530 538 / 0 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 531 / 0 ARF ARF18 auxin response factor 18 (.1) AT4G23980 518 / 2e-176 ARF ARF9 auxin response factor 9 (.1.2) AT1G35540 508 / 3e-173 ARF ARF14 auxin response factor 14 (.1) AT1G34410 498 / 3e-169 ARF ARF21 auxin response factor 21 (.1) AT1G34390 488 / 1e-165 ARF ARF22 auxin response factor 22 (.1) AT1G34310 483 / 1e-163 ARF ARF12 auxin response factor 12 (.1) AT1G35520 479 / 6e-162 ARF ARF15 auxin response factor 15 (.1) AT1G59750 481 / 7e-162 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G62000 472 / 1e-155 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100100 [exp] 1146 / 0 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 800 / 0 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 787 / 0 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.003G001000 [exp] 615 / 0 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.004G228800 [exp] 493 / 1e-166 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.012G106100 [exp] 476 / 1e-157 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 470 / 5e-155 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 450 / 2e-148 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 433 / 2e-141 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023058 [exp] 709 / 0 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10007440 [exp] 592 / 0 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 591 / 0 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10032413 [exp] 478 / 2e-165 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10043200 [exp] 465 / 4e-153 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 465 / 5e-153 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10030240 [exp] 375 / 3e-123 AT2G46530 381 / 1e-126 auxin response factor 11 (.1.2.3) Lus10041340 [exp] 360 / 5e-117 AT3G61830 370 / 2e-122 auxin response factor 18 (.1) Lus10033598 [exp] 344 / 1e-107 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10007386 [exp] 341 / 5e-106 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.002G172800.3 pacid=42779336 polypeptide=Potri.002G172800.3.p locus=Potri.002G172800 ID=Potri.002G172800.3.v4.1 annot-version=v4.1 ATGGCTCATGCTGAAAGAGGATGTGATGATCTGTATACAGAGCTATGGAAGGCATGTGCAGGGCCATTGGTGGATGTCCCAAAGGATGGAGAGAGAGTTT TTTACTTTCCTCAAGGTCACATGGAACAATTAGAAGCATCAACAAATCAAGAACTGAATCAGCAAATCCCACGGTTTAATCTTCCACCTAAGATCCTCTG TCGTGTTGTAAACATTCAACTGCTGGCTGAACAAGACACGGATGAAGTTTATGCTCAGATTACTCTGCACCCAGAAGTAGATCAAACCGAACCTACAAGT CCTGACCCTTGTCCACCTGAGCCGGCAAAGCCAACAATTCATTCCTTTTGCAAAATTTTAACGGCTTCTGATACTAGCACCCATGGAGGCTTCTCTGTTC TCAGAAAGCATGCCACTGAATGCTTGCCTCCTTTGGACATGAGCCAAGCAACACCAACTCAGGAACTGGCTGCCAGAGATCTTCATGGCTTTGAGTGGCG GTTCAAGCATATATTTAGAGGTCAACCGCGAAGGCATTTACTTACAACAGGATGGAGCACATTTGTCACTTCCAAAAGGCTGGTTGCAGGAGATGCTTTT GTGTTTCTTAGAGGTCATAATAGGGAACTGCGAGTTGGAGTTCGGCGTCTTGCTCGGCAGCAAAGCTCCATTCCATCATCGGTGATATCCAGCCAAAGCA TGCACTTAGGAGTGCTTGCTACTGCCTCTCATGCTGTTTTGACACAGACCCTCTTTGTTGTGTACTACAAGCCAAGGACAAACCAGTATATCATTGGGCT GAACAAATATCTGGAGGCTGTTAAGAATGGATTTTCTGTAGGTATGCGCTTCAAGATGAGATTTGAGGGAGAGGATTCTCCTGAGAGAAGGTTCACAGGA ACAATAGTTGGAGTTGGAGATATTTCTCCAGAGTGGTCTGGCTCTATATGGCGGTCATTGAAGATTCAATGGGATGAACCAGCAACTATTCAAAGGCCAG AGAGAGTTTCTCCATGGGACATAGAGCCTTTTGCAGCCCCTGCTTCCCCAAATCTTACTCAACAGGTGATGAAGACCAAAAGGCCTAGACCTACAGATAT TCCTACATCTGTGATTACTCCAAATTCAGCTGCTTCATCTTTCTGGTATCATGGATCAACCCAATCCCATGAGTTAGCCCAACTGGGGAGTAGTAATGAA GTCCAAAGCTCTGAAAGCCATGTATGGTCTATGAGGCAAAAGGAAATTGATAGCAGTCTCCTCAATAATAGCAGTAGCAGCAACACAAGGGCTCGACCAG AAGGAATCTGGCCTTCTTCACCTAACATGAATGTCTCTCTCAACTTTTTTCCAGATTCAGTGGGGGACAATAATTTTGCTACAACACGGTCTATTATCTC CGGTTTTTCCTCTCCTATATCATCAAGGCAAAGCAATTGCCTGATAAATGAGCAGGTGGAGAAGGGGAGAAAGTATGAGAACTCTGTAGGTTGCCGGTTG TTTGGAATTGATCTGACAAGTAACTCCGGTAGTTCTGCTCCTCCAGAGAAGGAGCCTGGATATCCAATTGTTGATTCTAATGGCACCAAAGGACTTGTTC CAGCTGCAAGCGAGGCTGAGAGGGCCCAAGCAATGGACGTATCAATGTACTCGAAAGAACAGAAGCAAGTTTTATCAGAGGCGATGGTAAAGGAGTCACA AAGCAAGCAAGGCTCCACAACCTCCATGAGAACTCGTACTAAGGTGCAAATGCAAGGGATTGCTGTTGGCCGTGCTCTTGATTTAACTGTCTTGAAAGGA TACAGGGATCTTATATATGAGCTGGAGAAGATGTTTGAAATCGAAGGAGAACTCTCCACACCCAATAAATGGGCTGTTGTGTTTACAGATGATGAGGGCG ATATGATGCTTGTGGGTGATGATCCATGGCCGGAGTTCTGTAAGATGGTGAAGAAGATATTCATCTATTCAAGTGAGGAAGTGAAGAAGACGGGCACAAG ATGCAAGCTTCCAGCATCTTCTTTTGAGGGTGAAGAGACTGTTGTAAGCATGGACTCGGACCATAGGTCTGATGCATGA
AA sequence Show only first row Show all	>Potri.002G172800.3 pacid=42779336 polypeptide=Potri.002G172800.3.p locus=Potri.002G172800 ID=Potri.002G172800.3.v4.1 annot-version=v4.1 MAHAERGCDDLYTELWKACAGPLVDVPKDGERVFYFPQGHMEQLEASTNQELNQQIPRFNLPPKILCRVVNIQLLAEQDTDEVYAQITLHPEVDQTEPTS PDPCPPEPAKPTIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQATPTQELAARDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAF VFLRGHNRELRVGVRRLARQQSSIPSSVISSQSMHLGVLATASHAVLTQTLFVVYYKPRTNQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDSPERRFTG TIVGVGDISPEWSGSIWRSLKIQWDEPATIQRPERVSPWDIEPFAAPASPNLTQQVMKTKRPRPTDIPTSVITPNSAASSFWYHGSTQSHELAQLGSSNE VQSSESHVWSMRQKEIDSSLLNNSSSSNTRARPEGIWPSSPNMNVSLNFFPDSVGDNNFATTRSIISGFSSPISSRQSNCLINEQVEKGRKYENSVGCRL FGIDLTSNSGSSAPPEKEPGYPIVDSNGTKGLVPAASEAERAQAMDVSMYSKEQKQVLSEAMVKESQSKQGSTTSMRTRTKVQMQGIAVGRALDLTVLKG YRDLIYELEKMFEIEGELSTPNKWAVVFTDDEGDMMLVGDDPWPEFCKMVKKIFIYSSEEVKKTGTRCKLPASSFEGEETVVSMDSDHRSDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.002G172800 [exp]	0	1
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.005G051700 [exp]	1.41	0.9135
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	2.44	0.9049
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	2.82	0.8882
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	4.89	0.8924
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	8.06	0.8809
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.008G078500 [exp]	8.71	0.8960
AT1G03000		PEX6	peroxin 6 (.1)		Potri.014G133000 [exp]	10.95	0.8673
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	11.48	0.8647
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	14.00	0.8922
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Potri.017G088300 [exp]	14.07	0.8864

Compare expression of checked genes

Potri.002G172800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.