Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00950 113 / 8e-30 MEE47 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) AT4G27810 77 / 6e-17 unknown protein AT5G53030 72 / 1e-14 unknown protein AT3G61840 44 / 2e-05 Protein of unknown function (DUF688) (.1) AT2G46535 40 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100200 [exp] 317 / 5e-110 AT4G00950 87 / 7e-20 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Potri.015G011900 [exp] 89 / 2e-21 AT4G27810 97 / 3e-25 unknown protein Potri.012G016700 [exp] 65 / 1e-12 AT4G27810 87 / 1e-21 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005972 [exp] 89 / 3e-21 AT4G00950 62 / 2e-11 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1) Lus10010114 [exp] 88 / 1e-20 AT4G10810 63 / 5e-13 unknown protein Lus10030238 [exp] 84 / 2e-19 AT4G00950 61 / 1e-10 maternal effect embryo arrest 47, Protein of unknown function (DUF688) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G172900.2 pacid=42778783 polypeptide=Potri.002G172900.2.p locus=Potri.002G172900 ID=Potri.002G172900.2.v4.1 annot-version=v4.1 ATGGCATCTGAGGCAGAAGACGAGCCTATCTTCACACCACCAAGGCTACTGCTGATGCCAAAACCACATGCACATTTACAGTCACCAGAGAGGTCAGGGA CACTAACCCCACCACTCCAAACTTCAGCCTCTGTTCCATTTCGGTGGGAGGAAGAGCCTGGCAAACCCTGGGAGAGCACCGCCCTGGTCCCCAGGGCCAT CAACTTTCCACAAAAGTCCCTAGAGTTACCTCCGAGGCTGTTAATAGACACCAACATGACCAAACTACCTTCACCCACCACAGTCTTGGAGGGTCCTTAC ATGGGCAAGTCATCAAGATTTCAGTCTTCTTCGTTCAGAATAATCAGATCAAGGGAATGTTATGGGTCCTTTCGCAGTTGTAGTCCTGAGAAGGGTCAGC TTGGCACCGTAGTTCCTAGCAAGAGGAGAGTCAAAGAGAAAGGCAGGTTTCTGGGTTCATGGAGTTGGGTAAGGAGGGGTTTGAAGGGTAAGAGAGAGTC TGGTGGGGGTAGTTATGTCTTTCCATCTTCAGTGGATAGGGAACCTGCTGATCATTGCGTCAATGAAGAGGAAGAGATGATCAGTAGCAGCGACAACGTC AAGATGACAAGGTCAGGGAGTCTCTCTGCTGTCTCTAATGCCAGGTCTCAATTCTGGGCGAATGTTTACGAGGGCTTGAAGCAGGTGGTGCCTTGGAGGA GCAAGGAGCTGAAGAAAGACCACGGGCTTCTGATTTGA
AA sequence Show only first row Show all	>Potri.002G172900.2 pacid=42778783 polypeptide=Potri.002G172900.2.p locus=Potri.002G172900 ID=Potri.002G172900.2.v4.1 annot-version=v4.1 MASEAEDEPIFTPPRLLLMPKPHAHLQSPERSGTLTPPLQTSASVPFRWEEEPGKPWESTALVPRAINFPQKSLELPPRLLIDTNMTKLPSPTTVLEGPY MGKSSRFQSSSFRIIRSRECYGSFRSCSPEKGQLGTVVPSKRRVKEKGRFLGSWSWVRRGLKGKRESGGGSYVFPSSVDREPADHCVNEEEEMISSSDNV KMTRSGSLSAVSNARSQFWANVYEGLKQVVPWRSKELKKDHGLLI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00950		MEE47	maternal effect embryo arrest ...		Potri.002G172900 [exp]	0	1
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025701 [exp]	7.61	0.7134
AT5G63970			Copine (Calcium-dependent phos...		Potri.007G103700 [exp]	54.68	0.6587
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.002G173900 [exp]	67.52	0.6501
AT2G43890			Pectin lyase-like superfamily ...		Potri.007G145300 [exp]	93.73	0.5865
AT5G63480			unknown protein		Potri.015G097800 [exp]	128.49	0.5558
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G120700 [exp]	142.08	0.5863
					Potri.010G072200 [exp]	142.31	0.5749
					Potri.005G099050 [exp]	143.42	0.5670
AT3G11930			Adenine nucleotide alpha hydro...		Potri.016G064000 [exp]	146.66	0.5936
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G288500 [exp]	156.97	0.5631

Compare expression of checked genes

Potri.002G172900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.