Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46550 180 / 2e-52 unknown protein AT1G01240 102 / 4e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100300 [exp] 650 / 0 AT2G46550 213 / 2e-64 unknown protein Potri.005G071400 [exp] 61 / 2e-10 AT2G46550 80 / 5e-18 unknown protein Potri.007G097400 [exp] 59 / 5e-10 AT2G46550 66 / 5e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005973 [exp] 293 / 2e-95 AT2G46550 269 / 2e-86 unknown protein Lus10030237 [exp] 290 / 2e-94 AT2G46550 273 / 3e-88 unknown protein Lus10012748 [exp] 44 / 5e-05 AT2G46550 57 / 6e-10 unknown protein Lus10023163 [exp] 44 / 5e-05 AT2G46550 60 / 5e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G173200.3 pacid=42777532 polypeptide=Potri.002G173200.3.p locus=Potri.002G173200 ID=Potri.002G173200.3.v4.1 annot-version=v4.1 ATGCCAGATCAATCTTCTGTAGGTTTTATGCCCCCCAAAACGAATCCCTCATATTACAGTCTACCCCCTGATACAAGTTGGTGGCTTCAACTGCAACCTA GCTATGGGTACCAAAAATGTTTAACACGTGAGCAGTTGAATGCTTTGGAAACTGAGTTGGAAAGCTTGAGAACTAACATTGTAGACTCACCCTCTAAAAA TGAGATTTGTAAACAAGATGACGAAGACAACATGTTTCTGGATGGCAGCAAGAATAGCGAGTCATCTCTTGATTCATATTGTAGGATCTCTGCTGATTAT ATGAAGAAAGATTGTGATGTTAAGAAACAAGAGCTAAAGGCTTTATATGACAAGGATTTTCAAGAATTTAATGAGCTTAAGGATGCAAGGAAGAACTCCA AGTTGATGGAGATGGATCTTACTGGATGGCCCGAATCACAAAAGGACAATGAGCATGGCTTTGATCCAGAATCATCTTGGATTGGGAGTGAAAAGAATAT GCCATGGTGGCGCAAAACAGATAAAGATGATTTGGCCTCCCTGGTTGCACAGAAGTCACTTGATTATATTGGGAATTGTGACCTTCCCCCACCTCAAAAG GTTCACATCAGGAAATACCCATGTGCTCATTCTGGATCTTTTCAGCATGATAATACACTGGCATCATCTTTGGATTGGAAGGCACAAATTGGCTGTATCT CCTCAGCAACTGGTCATGTGCAGGGCTGTCCCAAATCTGAAGGCATGCCTGGAAAACAAAGAGGTTCAACTGAAGGGCAATCACTAAGTGGTTCTGACAA GGCATGCAGTTATGCAGCAACTATTAAGGAAGCTGCAGAAATTGGACAAATTTCTGAGAGTGATCCTTGCAAGGCTCAACTACTGGAAGCACTCCGTCAT TCTCAGACACGTGCAAGGGAAGCTGAGCAGGTAGCAAAGCAAGCATGTGCTGAGAAGGAGCATATTGTCAAACTCTTCTTCAAACAAGCCTCTCAACTCT TTGCCTATAAGCAGTGGTTCCAACTGCTGCAGCTCGAAACCCTTTACTACCAGATGAAAAACAGCGACCAGCCAATATCTAATCTCTTCCCTGTAGTTCT TCCATGGATTCCTCAAAAAGGTAGGAAACTGTGCAAGAGCTGGCAAAAGTCATCAAAGGGTAAACGAGGCAAGGAAAGTCATCCAAAGCATGATGTTGGC AAGTATGCTGTTGCTTTGGCATTAGGGTTGAGTCTTGTTGGTGCTGGGTTGCTTCTGGGATGGACAGTGGGTTGGGTGCTGCCTTTCTAG
AA sequence Show only first row Show all	>Potri.002G173200.3 pacid=42777532 polypeptide=Potri.002G173200.3.p locus=Potri.002G173200 ID=Potri.002G173200.3.v4.1 annot-version=v4.1 MPDQSSVGFMPPKTNPSYYSLPPDTSWWLQLQPSYGYQKCLTREQLNALETELESLRTNIVDSPSKNEICKQDDEDNMFLDGSKNSESSLDSYCRISADY MKKDCDVKKQELKALYDKDFQEFNELKDARKNSKLMEMDLTGWPESQKDNEHGFDPESSWIGSEKNMPWWRKTDKDDLASLVAQKSLDYIGNCDLPPPQK VHIRKYPCAHSGSFQHDNTLASSLDWKAQIGCISSATGHVQGCPKSEGMPGKQRGSTEGQSLSGSDKACSYAATIKEAAEIGQISESDPCKAQLLEALRH SQTRAREAEQVAKQACAEKEHIVKLFFKQASQLFAYKQWFQLLQLETLYYQMKNSDQPISNLFPVVLPWIPQKGRKLCKSWQKSSKGKRGKESHPKHDVG KYAVALALGLSLVGAGLLLGWTVGWVLPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46550			unknown protein		Potri.002G173200 [exp]	0	1
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Potri.011G044900 [exp]	1.73	0.8195
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.006G039500 [exp]	4.58	0.7890
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Potri.013G116400 [exp]	6.00	0.7812
AT1G23210		ATGH9B6	glycosyl hydrolase 9B6 (.1)		Potri.015G127900 [exp]	6.78	0.8240
AT4G17900			PLATZ transcription factor fam...		Potri.019G051200 [exp]	7.48	0.8069
					Potri.009G035950 [exp]	7.74	0.7814
AT3G59310			Eukaryotic protein of unknown ...		Potri.002G230600 [exp]	8.30	0.7646
AT3G55760			unknown protein		Potri.008G159500 [exp]	9.16	0.7908
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411100 [exp]	9.94	0.7826
AT5G04740		ACR12	ACT domain repeats 12, ACT dom...		Potri.008G020700 [exp]	11.48	0.7655

Compare expression of checked genes

Potri.002G173200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.