Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10840 707 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G27960 553 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G27500 544 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G31240 142 / 8e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37590 45 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100400 [exp] 956 / 0 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G087800 [exp] 718 / 0 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G143200 [exp] 717 / 0 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G075300 [exp] 640 / 0 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080100 [exp] 622 / 0 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G094700 [exp] 577 / 0 AT3G27960 736 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G222900 [exp] 158 / 2e-41 AT2G31240 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G085200 [exp] 59 / 6e-09 AT5G37590 530 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017304 [exp] 717 / 0 AT4G10840 932 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10003201 [exp] 711 / 0 AT4G10840 927 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10002376 [exp] 615 / 0 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 613 / 0 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022231 [exp] 528 / 0 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008786 [exp] 526 / 3e-180 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033883 [exp] 122 / 3e-29 AT2G31240 737 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003563 [exp] 121 / 9e-29 AT2G31240 734 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020811 [exp] 44 / 0.0004 AT5G37590 405 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13374 [poplar] [flax] TPR_10 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.002G173400.1 pacid=42779858 polypeptide=Potri.002G173400.1.p locus=Potri.002G173400 ID=Potri.002G173400.1.v4.1 annot-version=v4.1 ATGTTGGGCCTAGTCTCTGCAAAAACCACACCCAATGCCACCCCATTGCACAATTCCTTCCCTCAGAACGACAATCACATCCATAAAAACGGAAATAAAA CCCCATCTCCGCTTCTAAAGCGAACCCCATCACCCTCCTTCTCCAAACCAAAAATCAAACCTTCCAAAAAGACACTGCAAGAACTACGCATCGATGAGTC GTCTCTTGATAACCCGGATCTGGGCCCCTTTTTATTAAAGCTTGCCATAGACACCATTGCTTCCGGTGATAACCAGAATAAGGCCTTAGATTATGCGACC CGAGCGTCAATATCGTTTGAGATATCCTCTGGTCCGGGTCTGGACCTGGCTATGAGCTTGCAAGTGGAAGCTGCAATCTATTGCAGCAGGAACCGATTGG AGAACGCAATTCCGGTTTTAGAACGGTCTATTGAGGTTTTGGATCATAAAAGCGGGTCGGATCATGCGATGGCGAAGTTTTCCGGGTTCATGCAGCTCGG TGACACGTATTCTATGCTAGGCCGGGTGGACCGATCCATATCGTCTTATGAGTCCGGTTTAAAGATCCAAATTGAGACTCTCGGGGATTTGGATCCAAGA GTTGCTGAGTCTTGCAGGTATTTAGCCGAGGCTTATGTTCAAGCAATGCAGTTTGACGAGGCAGAAAAACTATGCCAAAAGAGCCTTGAAATTCACAGGG AGCATAACGCACCAGCATCAATTGAAGAGGCAGGTGATCGCCGGCTTATTGCTCTTATTTATGAAGCGAAGGGGGAGTATGAATGTGCTCTTGAGGAACT TGTACTTGCTAGTATGGTGATGATTGCTGCCGGTCAGGAAAATGAAGTAGCTGCTATTGATGTTAGCATTGGCAATATCTATGTGTTCCTCTGTCGCTTT GATGAAGCCATTTTTTCATACCAAAAAGCCTTAACAGTCTTTAAATCTACAAGGGGAGATGAATACTCTCCTGTTGCGTCGGTTTATAATCGCTTGGCAG AAGTGTATTATAAAACAGGCAAGCTAAGAGAGTCCAAATCATACTGTGAGAATGCGCTGAGAATATTTTCAAAGCCAGTGACTGGGATTGCAACCGAGGA GATTGCTAGTGGTTTGGCTGAAATCTCAGCCATCTATGAAGCTTTAAATGAACATGGGGAGGCGTTGAAGCTCTTGTACATGGCCATGAAGTTACTGAAG GACACGCCAGGGCAACGCAGCATGATTGCAGGAATTGAAGCACAAATGGGACTGATGTTTTACAAGGTTGGAAAGTATGGGGAGGCTCGAAGTTCCTTCG AAAATGCTGTAGCAAAACTCCGGGCCAGTGGGGATGCTAAATCAGTCTTCTTTGGGATTTTGTTGAACCAGCTGGGACTGGCCAGTGTGCAACTGTACAG GATACATGAGGCAGTTGAATTATTCGAAGAAGCAAGAGAGATTTTAGAGCAGGAATGTGGCTCATGTCACTCGGATACCCTTGGAGTGTATAGCAATCTT GCAGCAACTTATGATGCTTTGGGAAGGGTCGAAGATGCAGCTGTGATATTGGAGTACATACTCAAGTTAAGAGAAGAAAAACTTGGAACAGCAAATCCAG AAGTTGCTGATGAGAAGAAAAGGCTAGCCGTGCTCTTGAAGGAAGCAGGGAGGGCTAGGATCAGGAAAGGCAACTCCCTTGTAAATCTCCTGGATTCCAG CTCCTAG
AA sequence Show only first row Show all	>Potri.002G173400.1 pacid=42779858 polypeptide=Potri.002G173400.1.p locus=Potri.002G173400 ID=Potri.002G173400.1.v4.1 annot-version=v4.1 MLGLVSAKTTPNATPLHNSFPQNDNHIHKNGNKTPSPLLKRTPSPSFSKPKIKPSKKTLQELRIDESSLDNPDLGPFLLKLAIDTIASGDNQNKALDYAT RASISFEISSGPGLDLAMSLQVEAAIYCSRNRLENAIPVLERSIEVLDHKSGSDHAMAKFSGFMQLGDTYSMLGRVDRSISSYESGLKIQIETLGDLDPR VAESCRYLAEAYVQAMQFDEAEKLCQKSLEIHREHNAPASIEEAGDRRLIALIYEAKGEYECALEELVLASMVMIAAGQENEVAAIDVSIGNIYVFLCRF DEAIFSYQKALTVFKSTRGDEYSPVASVYNRLAEVYYKTGKLRESKSYCENALRIFSKPVTGIATEEIASGLAEISAIYEALNEHGEALKLLYMAMKLLK DTPGQRSMIAGIEAQMGLMFYKVGKYGEARSSFENAVAKLRASGDAKSVFFGILLNQLGLASVQLYRIHEAVELFEEAREILEQECGSCHSDTLGVYSNL AATYDALGRVEDAAVILEYILKLREEKLGTANPEVADEKKRLAVLLKEAGRARIRKGNSLVNLLDSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.002G173400 [exp]	0	1
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G223000 [exp]	2.82	0.8731
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.011G136700 [exp]	4.12	0.8737
AT4G03340			Core-2/I-branching beta-1,6-N-...		Potri.019G104600 [exp]	17.54	0.8194
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	17.60	0.8279
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.008G086900 [exp]	22.00	0.7350
AT2G04850			Auxin-responsive family protei...		Potri.014G161700 [exp]	27.01	0.8209
AT2G41770			Protein of unknown function (D...		Potri.016G055700 [exp]	27.56	0.8220
AT3G08670			unknown protein		Potri.016G139500 [exp]	28.37	0.7763
					Potri.005G174900 [exp]	29.34	0.6950
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.001G295800 [exp]	34.64	0.8149

Compare expression of checked genes

Potri.002G173400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.