Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10810 69 / 1e-16 unknown protein AT4G24026 55 / 2e-11 unknown protein AT4G24030 55 / 5e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G087200 [exp] 63 / 2e-14 AT4G10810 60 / 2e-13 unknown protein Potri.014G013600 [exp] 59 / 1e-12 AT4G10810 56 / 1e-11 unknown protein Potri.002G116200 [exp] 57 / 9e-12 AT4G10810 53 / 3e-10 unknown protein Potri.014G007000 [exp] 49 / 1e-08 AT4G10810 43 / 1e-06 unknown protein Potri.003G143800 [exp] 48 / 1e-08 AT4G10810 60 / 2e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012620 [exp] 72 / 7e-18 AT4G10810 62 / 2e-14 unknown protein Lus10010114 [exp] 75 / 2e-17 AT4G10810 63 / 5e-13 unknown protein Lus10007785 [exp] 57 / 1e-11 ND 56 / 4e-11 Lus10023038 [exp] 47 / 3e-08 AT4G10810 67 / 3e-16 unknown protein Lus10022380 [exp] 45 / 3e-07 AT4G10810 60 / 2e-13 unknown protein Lus10032433 [exp] 40 / 5e-05 ND 50 / 6e-08
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G173700.1 pacid=42779199 polypeptide=Potri.002G173700.1.p locus=Potri.002G173700 ID=Potri.002G173700.1.v4.1 annot-version=v4.1 ATGGACAGCACCACCACCACCACCACCACCACAAATCCTAATAACAACAATTGCAATTTCATGTCATGTGAAAAGCTGGATCGGGTTGCCAGTTGGGTTG GGGTCAACGTGGCGTCTGCTTTCTTTGCTTCTCTTGAAAGATGCTCTTGCATCAACCTTAACACCACCGATCTTGAAGACGATGAAGAAGCCAGGGACCG TCCTCTCATGCTCACCAAGCCTTCGGCCCACGATCACCACCTCGATGCCCAGCCCACCATCAATAGCGATGCCCCTAAGCTCTCCGTCTGA
AA sequence Show only first row Show all	>Potri.002G173700.1 pacid=42779199 polypeptide=Potri.002G173700.1.p locus=Potri.002G173700 ID=Potri.002G173700.1.v4.1 annot-version=v4.1 MDSTTTTTTTTNPNNNNCNFMSCEKLDRVASWVGVNVASAFFASLERCSCINLNTTDLEDDEEARDRPLMLTKPSAHDHHLDAQPTINSDAPKLSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10810			unknown protein		Potri.002G173700 [exp]	0	1
AT2G44200			CBF1-interacting co-repressor ...		Potri.006G000200 [exp]	2.82	0.8997
AT5G13310			unknown protein		Potri.003G163100 [exp]	3.74	0.8625
AT3G12400		ELC, ATELC	Ubiquitin-conjugating enzyme/R...		Potri.003G191100 [exp]	4.00	0.8856
AT3G29270			RING/U-box superfamily protein...		Potri.004G125400 [exp]	4.00	0.8581
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Potri.010G223100 [exp]	4.47	0.8696
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Potri.002G213600 [exp]	6.40	0.8235
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.008G003300 [exp]	8.00	0.8715	GCN4.3
AT3G57810			Cysteine proteinases superfami...		Potri.010G234300 [exp]	8.83	0.8371
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	11.09	0.8758	Pt-NAC2.1,NAC049
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.010G195000 [exp]	12.96	0.7708

Compare expression of checked genes

Potri.002G173700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.