Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46580 293 / 2e-102 Pyridoxamine 5'-phosphate oxidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100700 [exp] 364 / 2e-130 AT2G46580 295 / 4e-103 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.002G102600 [exp] 43 / 9e-05 AT5G49970 761 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030234 [exp] 303 / 3e-106 AT2G46580 275 / 2e-95 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10005977 [exp] 300 / 8e-105 AT2G46580 274 / 1e-94 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10002098 [exp] 45 / 1e-05 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10000833 [exp] 45 / 2e-05 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0336 [poplar] [flax] FMN-binding PF12766 [poplar] [flax] Pyridox_oxase_2 Pyridoxamine 5'-phosphate oxidase
Representative CDS sequence Show only first row Show all	>Potri.002G173800.9 pacid=42778539 polypeptide=Potri.002G173800.9.p locus=Potri.002G173800 ID=Potri.002G173800.9.v4.1 annot-version=v4.1 ATGGGAACAGTAACCCCATCTCCATGGAAGCGGCTTCTTCTGAGCGCAATAGAGTCAAACTCTCACCTCAAACACTCTTATTTCGTTCAATTTGCAACAA TTGGATCTAATGGCAGACCTTCCAATCGCTCTGTCGTTTTCAGAGGATTTGAAGAAAATAGCGATAGAATCCAAATCAACACTGATTTCCGTACACGCAA GATTGAAGAGCTTAATCATTGTCCATTTGCTGAGATATGTTGGTATTTTACCGACTCTTGGGAGCAATTCCGGATCAATGGAAGAGTTGATGTTATTGAT GGGTCCAATCCCAATCCGGCAAAGCTTCAGCAAAGAGAGAAATTGTGGTTTGCTAGTGCTATAAAATCAAGGCTGCAGTACTTGGGACCTAATCCTGGTC TTCCTTGTCTAAGTGAGCAATCTCCAGATGAATTCTTTCTTGACCCCTCTTCAGGCCCAGTCGCCACATTCTGTCTGCTGGTTTTAGAGCCTGATCAGGT TGATTACTTGAATTTGAAGAGTAACCAGAGAATAGTGTCCACCTTGTCACGGAGTGCCAATGGAGAAATGTGTTGGAATTCAGAGATGATCAATCCATAA
AA sequence Show only first row Show all	>Potri.002G173800.9 pacid=42778539 polypeptide=Potri.002G173800.9.p locus=Potri.002G173800 ID=Potri.002G173800.9.v4.1 annot-version=v4.1 MGTVTPSPWKRLLLSAIESNSHLKHSYFVQFATIGSNGRPSNRSVVFRGFEENSDRIQINTDFRTRKIEELNHCPFAEICWYFTDSWEQFRINGRVDVID GSNPNPAKLQQREKLWFASAIKSRLQYLGPNPGLPCLSEQSPDEFFLDPSSGPVATFCLLVLEPDQVDYLNLKSNQRIVSTLSRSANGEMCWNSEMINP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46580			Pyridoxamine 5'-phosphate oxid...		Potri.002G173800 [exp]	0	1
AT1G43900			Protein phosphatase 2C family ...		Potri.005G186001 [exp]	2.44	0.8550
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Potri.016G004200 [exp]	4.24	0.8546
AT2G14860			Peroxisomal membrane 22 kDa (M...		Potri.001G296400 [exp]	4.89	0.8226
AT4G28440			Nucleic acid-binding, OB-fold-...		Potri.007G137600 [exp]	7.48	0.8319
AT3G13550		EMB144, COP10, ...	FUSCA 9, EMBRYO DEFECTIVE 144,...		Potri.001G089300 [exp]	8.06	0.8283
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Potri.009G134200 [exp]	11.83	0.7798
AT2G04230			FBD, F-box and Leucine Rich Re...		Potri.004G020200 [exp]	14.86	0.8044
AT3G20800			Cell differentiation, Rcd1-lik...		Potri.001G359300 [exp]	15.00	0.7663
AT5G40370		GRXC2	glutaredoxin C2, Glutaredoxin ...		Potri.001G347700 [exp]	15.29	0.7738	PtrcGrx_C2
AT4G35360			Uncharacterised conserved prot...		Potri.009G169000 [exp]	15.29	0.8039

Compare expression of checked genes

Potri.002G173800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.