Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description ATCG00710 119 / 7e-36 ATCG00710.1, PSBH photosystem II reaction center protein H (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G074901 [exp] 130 / 6e-40 ATCG00710 135 / 1e-43 photosystem II reaction center protein H (.1) Potri.011G113742 [exp] 130 / 6e-40 ATCG00710 135 / 1e-43 photosystem II reaction center protein H (.1) Potri.019G028200 [exp] 130 / 6e-40 ATCG00710 135 / 1e-43 photosystem II reaction center protein H (.1) Potri.011G074742 [exp] 55 / 5e-11 ATCG00710 57 / 3e-13 photosystem II reaction center protein H (.1)
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00737 [poplar] [flax] PsbH Photosystem II 10 kDa phosphoprotein
Representative CDS sequence Show only first row Show all	>Potri.002G174001.1 pacid=42779569 polypeptide=Potri.002G174001.1.p locus=Potri.002G174001 ID=Potri.002G174001.1.v4.1 annot-version=v4.1 ATGCCTCTGAATTCCTTGACATTTTGTAGGGGATTGATGTCACCTCAAGTGCGTTCATTAGTCTCTTTCCATGGTAGCGCCATGTTTGGATATCTGATAG ACCAAAGGAAGGAGCCGCCTTTGCTTTGGGAGGATTCCTTGATCGGGAGCTGCTGGAAAATAGCCTTTAACCTAGCAGTGATGATGGTAGGCCCTAATTG CATCAATTTTCATTTAATTTTTTGGTGTGCGAGCTTTTGCATTGCAAAGGTTCATGGCAACATAAAAAAGAAATACACTCACACACACAGAGCACACACA CACACACAGAGCGTTGAGGGGAGTTCTAGATCTGGTCCAAGACGAACTATTGTAGAGAATTTATTGAAACCATTGAATTTGGAATATGGAAAAGTAGCTC CGGGGTGGGGAACTACTTCTTTGATGGGTGTCGTAATGGCTCTATTTGCGATATTCCTATCTATTATTTTGAAGATTTATAATTCTTCTATTTTACTGGA TGGAATTTCAATGAATTAG
AA sequence Show only first row Show all	>Potri.002G174001.1 pacid=42779569 polypeptide=Potri.002G174001.1.p locus=Potri.002G174001 ID=Potri.002G174001.1.v4.1 annot-version=v4.1 MPLNSLTFCRGLMSPQVRSLVSFHGSAMFGYLIDQRKEPPLLWEDSLIGSCWKIAFNLAVMMVGPNCINFHLIFWCASFCIAKVHGNIKKKYTHTHRAHT HTQSVEGSSRSGPRRTIVENLLKPLNLEYGKVAPGWGTTSLMGVVMALFAIFLSIILKIYNSSILLDGISMN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
ATCG00710		ATCG00710.1, PS...	photosystem II reaction center...		Potri.002G174001 [exp]	0	1
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.015G050200 [exp]	30.28	0.6305
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Potri.006G209000 [exp]	33.39	0.6344
AT1G75290			NAD(P)-binding Rossmann-fold s...		Potri.010G129800 [exp]	46.47	0.6062
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Potri.017G125800 [exp]	47.62	0.5714
					Potri.011G003325 [exp]	48.00	0.6232
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G051500 [exp]	62.13	0.6124	Pt-CHS.6,CHS2
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.014G145100 [exp]	70.86	0.5991	Pt-CHS.7
					Potri.004G088550 [exp]	120.41	0.5456
AT2G28690			Protein of unknown function (D...		Potri.001G235200 [exp]	128.61	0.5568
AT3G24750			unknown protein		Potri.002G240300 [exp]	151.13	0.5495

Compare expression of checked genes

Potri.002G174001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.