Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53500 523 / 2e-177 Transducin/WD40 repeat-like superfamily protein (.1) AT5G42010 474 / 8e-158 Transducin/WD40 repeat-like superfamily protein (.1) AT5G24320 466 / 5e-155 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G54200 442 / 4e-144 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 429 / 2e-138 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 417 / 1e-136 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G02430 369 / 3e-115 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 363 / 8e-113 Transducin/WD40 repeat-like superfamily protein (.1) AT1G48870 294 / 4e-90 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 92 / 8e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009700 [exp] 666 / 0 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 647 / 0 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G086600 [exp] 642 / 0 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 640 / 0 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 469 / 4e-153 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 457 / 3e-148 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G057600 [exp] 396 / 2e-128 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.007G110500 [exp] 379 / 1e-121 AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G084600 [exp] 384 / 9e-121 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032436 [exp] 620 / 0 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 615 / 0 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 504 / 7e-170 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 484 / 2e-162 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10022377 [exp] 464 / 2e-154 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003974 [exp] 377 / 2e-117 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 356 / 1e-109 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 344 / 1e-107 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10033525 [exp] 337 / 4e-106 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027671 [exp] 340 / 6e-106 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.002G174100.2 pacid=42779767 polypeptide=Potri.002G174100.2.p locus=Potri.002G174100 ID=Potri.002G174100.2.v4.1 annot-version=v4.1 ATGGAAATTTTGAGTGAAGAAGAGGATCAATTCTTCGACACTTGTGAGGATTGTCCCTCTGTATCTGATCCAGGCTCTGACTCCCCTGACAATTTGGATT CTGATTTTGGGGTTATTGGTTCCTTGCCTGGTAGTATTGGTTATGAGGTTTGGATCAAGAATCCAGGCTGTATTCGTGAAAGGCGCAATAAATTTTTAAA ATGGATGGGTTTGGATGTGAATCAAGCGGGGAAGGGTGATCCTGGCAATACGTCTTCCAATGAAGTGGAAGTTGAGACGGATAGGATTATGGAGCACAGC GATGCAGTTCTAAGATCATACAGTTTAGATGATGGACTCTCATCGAGTCAGTCTTCCATGTCGAGTTGGTCCAATGATGCCCAAGAGTTGTTAGATGGGG CAATGGAGGAGAATTTTTTGTGTAGGATTAGGAATTTGGATAACGGGACAGAGTTTATTCTGGATGAACTTCGGCAGGATGGCATGTCAGGGAGAATTCG TGAAGTTGGTTCAAATCGGTTACTTACTGCTGCTGAGTTTGAGAGGAGTCTTGGGTTTTCCCATTTGGTTCAGCAAGTGATGCGAAGAGAAGTTGAAGAT GTGCCCAATTTGGGGCTGCCAAGAAAGCAGGTAAAGATGGGATGGTTGAGGAGATTAGGTGCTGTCTCTTGCATCGTTGACAGGCAAGTGGAAGCTGGTG GTAATGGTCCTTATCCTGTTGCAGGGGCTAGGAATCAGATAGTTAGGGTTAAATCTTATAAGAAGCGGTCCAAGGAATTCTCTGCCCTTTACATGAGACA AGATATTCCAGCTCACGAGGGTTCAATATTGACTATGAAGTTCAGTCCTGATGGTCAGTACCTTGCGAGTGCAGGTGACGATGGAGTTGTGCGTGTATGG CAGGTGATGGAAAAGGAGAGATCAGATGAGTTAGGCATCCTTGATATTCATTCTTCCCATGCCCACTTCACGGTTAATGATCTTTCTGTAGCTCCCCTTA AGGTGGATAGAGAGAAAAAGGGTAAATTCAAGAGTATGCTAACATCAGACTCGGCTTGTGTCATTTTTCCTCAGAAAGTTTTTCAAATATCGGACAAACC AATCCATGAGTTTTTTGGGCACCGTGGAGAGGTTTTGGACCTCTCATGGTCAAAGGACAAGTATCTCCTTTCATCCTCAGTTGATAAAACTGTTCGCTTG TGGAAAGTGGGAAGCAACAAATGCCTACAAGTTTTCTTCCATAATGATTATGTTACCTGCGTCCAGTTTAATCCTGTGGATGAAAATTACTTCATCAGTG GTTCCATAGATGGGAAAGTACGCATCTGGGCAATTCCTGGTTGTCAAGTTGTTGACTGGACTGATATAACTGAAATTGTCACGGCTGTGTGTTATTGTCC TGATGGAAAGGGTGGAATCGTTGGCTCCATGAATGGCAATTGCCGCTTTTATGATGCAGCAGATAATCGTCTGCAGCAGTATGCACAAATATGCTTGCAG GGCAAGAAGAAGTCACCATTCAAGAGGATAACTGGCTTTCAGTTTTCTCCAAGTGACCCGACCAGGTTAATGGTCACTTCTGCTGATTCCCAAGTTCGAA TACTCCATGGAGTTGATGTGATATGCAAATATCGAGGCCTCCGTAATGCAGGAAGCCAAATATCTGCATCATTCACGTCAGATGGGATGCATATTGTTTC AGCTAGTGAGGATTCTTATGTCTATATCTGGAATAATATTAGCCAGGATGGGCCTGTGGCTCAGGAGAAGAAGAGCAAATGGTCTTGCGAGCGTTTCTTC TCAAACAATGTGTCAGTGGCTATACCCTGGTGTGGGATGACTTCTATGAATTGTAGCTCCTCAACTGTCACTAGAAAATCCCCATCCTCCATTAACTCAG GGCCGTGTAGTGAAAAAAGTGTGTTGCTGCAATCTGAGTTGGTTGAGAGTTCACAATGGAAATTGCCATTCTCTTCCCCTGAAAATTTATCACTCAGCCA CGGATTTTTCTCTCACTCTTTGCCCAAGGGTTCTGCAACATGGCCAGAGGAAAATCTTCCTGCAAGCTCATTGGTTGTATCATCTGCAATGTGCAAATCG CAGTACAAGTTCTTGAAGATGTCATGCCAGAGCATGCATGGCTCCCCTCATGCATGGGGTTTGGTGATTGTAACAGCTGGATGGGATGGACGAATCAGAT CATTCCAGAATTATGGATTACCAGTTCACCTTTAA
AA sequence Show only first row Show all	>Potri.002G174100.2 pacid=42779767 polypeptide=Potri.002G174100.2.p locus=Potri.002G174100 ID=Potri.002G174100.2.v4.1 annot-version=v4.1 MEILSEEEDQFFDTCEDCPSVSDPGSDSPDNLDSDFGVIGSLPGSIGYEVWIKNPGCIRERRNKFLKWMGLDVNQAGKGDPGNTSSNEVEVETDRIMEHS DAVLRSYSLDDGLSSSQSSMSSWSNDAQELLDGAMEENFLCRIRNLDNGTEFILDELRQDGMSGRIREVGSNRLLTAAEFERSLGFSHLVQQVMRREVED VPNLGLPRKQVKMGWLRRLGAVSCIVDRQVEAGGNGPYPVAGARNQIVRVKSYKKRSKEFSALYMRQDIPAHEGSILTMKFSPDGQYLASAGDDGVVRVW QVMEKERSDELGILDIHSSHAHFTVNDLSVAPLKVDREKKGKFKSMLTSDSACVIFPQKVFQISDKPIHEFFGHRGEVLDLSWSKDKYLLSSSVDKTVRL WKVGSNKCLQVFFHNDYVTCVQFNPVDENYFISGSIDGKVRIWAIPGCQVVDWTDITEIVTAVCYCPDGKGGIVGSMNGNCRFYDAADNRLQQYAQICLQ GKKKSPFKRITGFQFSPSDPTRLMVTSADSQVRILHGVDVICKYRGLRNAGSQISASFTSDGMHIVSASEDSYVYIWNNISQDGPVAQEKKSKWSCERFF SNNVSVAIPWCGMTSMNCSSSTVTRKSPSSINSGPCSEKSVLLQSELVESSQWKLPFSSPENLSLSHGFFSHSLPKGSATWPEENLPASSLVVSSAMCKS QYKFLKMSCQSMHGSPHAWGLVIVTAGWDGRIRSFQNYGLPVHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53500			Transducin/WD40 repeat-like su...		Potri.002G174100 [exp]	0	1
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Potri.014G180100 [exp]	2.00	0.9008	MRP9.1
AT2G43180			Phosphoenolpyruvate carboxylas...		Potri.002G231000 [exp]	2.44	0.9159
AT3G54000			unknown protein		Potri.006G093000 [exp]	3.16	0.8956
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	4.35	0.9203
					Potri.003G054001 [exp]	5.19	0.9042
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.018G009200 [exp]	5.29	0.8860	Pt-ATCNGC14.1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.002G006200 [exp]	6.00	0.8872
AT4G19840		AtPP2A-1, ATPP2...	phloem protein 2-A1 (.1)		Potri.012G120400 [exp]	6.32	0.8812
AT4G03260			Outer arm dynein light chain 1...		Potri.019G119300 [exp]	7.93	0.8928
AT3G49055			unknown protein		Potri.015G146100 [exp]	10.19	0.8912

Compare expression of checked genes

Potri.002G174100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.