Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61850 229 / 8e-74 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 201 / 1e-62 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT4G24060 168 / 4e-50 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT1G64620 157 / 1e-45 DOF AtDof1,8 Dof-type zinc finger DNA-binding family protein (.1) AT4G00940 151 / 3e-44 DOF AtDof4,1 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 118 / 8e-32 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G55370 119 / 2e-31 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT3G45610 114 / 2e-30 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT2G37590 115 / 6e-30 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT1G51700 110 / 2e-29 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G100900 [exp] 412 / 5e-147 AT3G61850 233 / 1e-75 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.003G144500 [exp] 306 / 8e-105 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.001G086400 [exp] 296 / 5e-101 AT4G24060 176 / 5e-53 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G018700 [exp] 239 / 3e-78 AT3G61850 141 / 9e-40 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.015G009300 [exp] 216 / 8e-70 AT4G24060 154 / 1e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.012G081300 [exp] 126 / 3e-34 AT5G62940 194 / 3e-59 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.015G077100 [exp] 123 / 5e-33 AT5G62940 191 / 4e-58 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 115 / 3e-30 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.005G149100 [exp] 115 / 7e-30 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012619 [exp] 199 / 4e-62 AT3G61850 201 / 2e-62 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10010113 [exp] 179 / 4e-54 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10017313 [exp] 150 / 2e-43 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1) Lus10023032 [exp] 150 / 3e-43 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10033218 [exp] 148 / 2e-42 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 147 / 5e-42 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1) Lus10003208 [exp] 147 / 2e-41 AT4G24060 167 / 3e-48 Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 110 / 3e-30 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 114 / 3e-29 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10016566 [exp] 113 / 5e-29 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [poplar] [flax] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Potri.002G174300.5 pacid=42779786 polypeptide=Potri.002G174300.5.p locus=Potri.002G174300 ID=Potri.002G174300.5.v4.1 annot-version=v4.1 ATGGATGCTGCTTCATGGCCACGGGATATTAAACTGGCAAGACCCATGGAAGAGATGACATCAAATACATGCGGAAGGCCTGTGTTAGAGAGAAAAGCAA GGCCTCAAGAGCAGTTGAACTGTCCAAGATGTAACTCAACCAATACCAAGTTTTGTTACTATAACAACTACAGTCTCACACAACCAAGATATTTTTGCAA GACTTGCAGAAGGTACTGGACTGAAGGAGGATCTCTTAGAAACGTTCCTGTTGGAGGAGGTTCAAGAAAGAACAAGAGATCTACATCATCATCAGTAGCA GCATCTGCAGCTCCGTCGAAGCTCCCCGATCTCAACCCACCAAACCTCTCACACTTCTCTTCTCAGAATCCTAAGAGTGCCCATGAAGGTCAAGACCTTA ATCTGGCATTCCCAGCTATGCAGGATAGTCAAGGTATATCTCATTATACTGAAGTGGCCAAAACTGAAAATAACAACTACAATCAACATAACTCTTATTC TTCTCCCTATACTTCATCTCCTATTTCAGCTCTGGAGCTACTAAGGAGTGGAATTGCTTCTAGGGGTTTGAATTCTTTTATCCCAACACCGATGCCAGAT TCAAATACACTTTATTCTTCGGGTGGATTCCCTTTGCAAGAATTGAAACCAACTCTGAGTTTTTCTCTTGATGGGCTTGGAAGTAGATATGGAGTTCAAG AACATAATGGAAGGCTTTTATTTCCTTTTGGTGAACTGAAACAGCTTTCAAGCACAAATGAAGTTGATCAAAACAAGGGACAAGGGACTTCAAGTACTGG ATACTGGAACGGAATGTTTGGTGGAGGATCATGGTAA
AA sequence Show only first row Show all	>Potri.002G174300.5 pacid=42779786 polypeptide=Potri.002G174300.5.p locus=Potri.002G174300 ID=Potri.002G174300.5.v4.1 annot-version=v4.1 MDAASWPRDIKLARPMEEMTSNTCGRPVLERKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTSSSVA ASAAPSKLPDLNPPNLSHFSSQNPKSAHEGQDLNLAFPAMQDSQGISHYTEVAKTENNNYNQHNSYSSPYTSSPISALELLRSGIASRGLNSFIPTPMPD SNTLYSSGGFPLQELKPTLSFSLDGLGSRYGVQEHNGRLLFPFGELKQLSSTNEVDQNKGQGTSSTGYWNGMFGGGSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.002G174300 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.013G056400 [exp]	1.00	0.9336
AT1G20990			Cysteine/Histidine-rich C1 dom...		Potri.005G258800 [exp]	6.00	0.9268
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.014G034000 [exp]	8.66	0.9103
AT2G48090			unknown protein		Potri.014G137850 [exp]	9.48	0.9325
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.001G028600 [exp]	11.66	0.9101
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.008G103300 [exp]	12.68	0.9045
AT3G10300			Calcium-binding EF-hand family...		Potri.016G043600 [exp]	13.78	0.8892
					Potri.002G101101 [exp]	13.85	0.9167
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.004G115400 [exp]	16.49	0.9102
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Potri.004G222100 [exp]	16.52	0.9115

Compare expression of checked genes

Potri.002G174300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.