Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01230 254 / 3e-88 ORMDL family protein (.1) AT5G42000 246 / 3e-85 ORMDL family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101000 [exp] 277 / 4e-97 AT1G01230 285 / 3e-100 ORMDL family protein (.1) Potri.003G144600 [exp] 253 / 1e-87 AT5G42000 281 / 8e-99 ORMDL family protein (.1.2) Potri.001G086300 [exp] 247 / 1e-85 AT5G42000 273 / 1e-95 ORMDL family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005980 [exp] 261 / 7e-91 AT1G01230 295 / 1e-104 ORMDL family protein (.1) Lus10023031 [exp] 245 / 2e-84 AT5G42000 270 / 1e-94 ORMDL family protein (.1.2) Lus10033219 [exp] 243 / 6e-84 AT5G42000 271 / 5e-95 ORMDL family protein (.1.2) Lus10030232 [exp] 245 / 1e-77 AT1G09880 661 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10003209 [exp] 164 / 2e-53 AT5G42000 194 / 2e-65 ORMDL family protein (.1.2) Lus10017314 [exp] 157 / 4e-50 AT5G42000 197 / 3e-66 ORMDL family protein (.1.2) Lus10031614 [exp] 74 / 1e-17 AT2G40190 81 / 1e-20 LEAF WILTING 3, UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04061 [poplar] [flax] ORMDL ORMDL family
Representative CDS sequence Show only first row Show all	>Potri.002G174400.1 pacid=42777841 polypeptide=Potri.002G174400.1.p locus=Potri.002G174400 ID=Potri.002G174400.1.v4.1 annot-version=v4.1 ATGGCGAATTTGTATGTGACGGCGGTGCCAACGGCGGATCTGAACAGGAACACGGAGTGGTTCATGTATCCAGGGGTTTGGACCACTTACATATTAATAT TGTTCTTTTTTTGGCTCATTGTTCTTGCTATCTTTGGTTGCTCTCCTGGCTTGGCCTGGACCATCGTCAATCTCTCTCACTTCGCTATCACTTATCACTT TTTCCACTGGAAGAAAGGAACCCCATTTGCTGAAGACCAGGGGATCTATAATCGGCTGACCTGGTGGGAACAGATAGATAAAGGGAAGCAGCTTACACGC AACAGAAAGTTTCTAACTGTTGTACCTGTGGTGCTGTACTTGATAGCCTCACACACCACTGACTATCAACATCCAATGCTCATTTTCAACACTCTTGCTG TGATGGTGCTTGTTGTTGCCAAGTTCCCGAATATGCACAAGGTTCGGATCTTTGGAATAAATGCAGACAAGTAA
AA sequence Show only first row Show all	>Potri.002G174400.1 pacid=42777841 polypeptide=Potri.002G174400.1.p locus=Potri.002G174400 ID=Potri.002G174400.1.v4.1 annot-version=v4.1 MANLYVTAVPTADLNRNTEWFMYPGVWTTYILILFFFWLIVLAIFGCSPGLAWTIVNLSHFAITYHFFHWKKGTPFAEDQGIYNRLTWWEQIDKGKQLTR NRKFLTVVPVVLYLIASHTTDYQHPMLIFNTLAVMVLVVAKFPNMHKVRIFGINADK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01230			ORMDL family protein (.1)		Potri.002G174400 [exp]	0	1
AT1G33970			P-loop containing nucleoside t...		Potri.019G077300 [exp]	1.73	0.9044
AT1G56423			unknown protein		Potri.005G017400 [exp]	4.00	0.8805
AT3G58130			N-acetylglucosaminylphosphatid...		Potri.012G041700 [exp]	5.91	0.8971
AT5G55000		FIP2	potassium channel tetramerisat...		Potri.019G038400 [exp]	6.70	0.8688
AT1G68000		ATPIS1	phosphatidylinositol synthase ...		Potri.009G135500 [exp]	6.92	0.8634
AT5G03740	C2H2ZnF	HD2C, HDT3	HISTONE DEACETYLASE 3, histone...		Potri.006G116500 [exp]	7.34	0.8595
AT1G76200			unknown protein		Potri.002G012700 [exp]	9.48	0.8793
AT5G18920			Cox19-like CHCH family protein...		Potri.010G028000 [exp]	9.59	0.8419
AT3G15395			unknown protein		Potri.001G402000 [exp]	9.89	0.8699
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.004G141800 [exp]	10.53	0.8134

Compare expression of checked genes

Potri.002G174400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.