Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00910 532 / 0 Aluminium activated malate transporter family protein (.1) AT1G08440 348 / 3e-115 Aluminium activated malate transporter family protein (.1) AT3G11680 330 / 5e-108 Aluminium activated malate transporter family protein (.1) AT1G08430 325 / 3e-106 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT2G27240 320 / 3e-104 Aluminium activated malate transporter family protein (.1) AT5G46600 314 / 2e-101 Aluminium activated malate transporter family protein (.1) AT4G17970 307 / 3e-98 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 298 / 3e-95 Aluminium activated malate transporter family protein (.1.2.3) AT3G18440 235 / 2e-70 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 226 / 3e-67 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101200 [exp] 623 / 0 AT4G00910 374 / 9e-126 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 567 / 0 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G085900 [exp] 549 / 0 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 382 / 1e-128 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 378 / 8e-127 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 377 / 2e-126 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 372 / 9e-125 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 371 / 3e-124 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 362 / 8e-121 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001528 [exp] 464 / 2e-160 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 461 / 8e-160 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 368 / 6e-123 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 368 / 6e-123 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 323 / 3e-106 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 311 / 5e-100 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 307 / 1e-98 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10001846 [exp] 302 / 1e-97 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10030975 [exp] 295 / 4e-94 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10022030 [exp] 221 / 1e-66 AT5G46600 237 / 2e-72 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.002G174600.1 pacid=42776805 polypeptide=Potri.002G174600.1.p locus=Potri.002G174600 ID=Potri.002G174600.1.v4.1 annot-version=v4.1 ATGGTGATGGGAAATAGAGCTCCAAACAAACTGGAATGGAGGATAAATGTACGTAATGGGACATCAGAGATACTACAGCCTAAGACTGGTTTAGTCCACA GAGTCTGGTCATGGTTGAAGGGTCTGCTGGGAGAATTCATGTTGAAAATTTGGAATTTTTTGGAGAAGGCTAGGAACATAGCGGTTGCTGAGCCTAAAAA GGTTATCCATTGTCTCAAAGTAGGGGTGACACTAACTATCGTGTCACTCTTCTACTATATGAGGCCTTTGTATGAAGGCGTTGGAGGGAATGCTATGTGG GCGATTATGACAGTTGTGGTAGTTTTTGAATACACTGTGGGGGCAACACTATATAAATGTATTAACAGAGCAATAGGCACTTTCCTTGCTGGTTCACTTG GCGTTGGCGTTCATTGGGCTGCAAGTCACTCTGGAGATAAACTCGAGCCCATAATTCTTGGAATCTCAGTTTTCCTTCTTGCTTCAGCAGCAACCTTTTC GCGGTTTATACCATCCGTTAAAGCCCGATTTGATTATGGTGTTTTGATTTTCATCCTGACCTTTAGCTTAGTGTCCGTTTCTGGTTATCGCGTGGATAAA TTGATTGATGTTGCACGTCAGAGGTTGTCCACAATTGCTATTGGGGCCTCCCTTTGCGTTCTCATGTGCATGTTATTCTACCCAATCTGGGCTGGCAAAG AGCTTCACAATTTGATTCATCGTAACCTGGAAAAGCTTGCTGATGCATTAGATGGATGTACTGCTGAGTACTTTACAGACAGCAGTGCTGGAGATTCTTG GAAGAAAATTGGAGGCTATAAATGTGTTCTTAATTCAAAGGCAGCTGAAGATTCTATGGCTGGCTTTGCAAGATGGGAGCCTGCACATGGTCGATTCAAC TTCCGGCATCCATGGAAGCAGTACCTAAAGGTCGGGGCGTCGCTGCGAAGCTGCGCATATTGCATTGAAACTCTCGATGGTTGCCTAAACTCAGAAATTA AGGCACCTGAGCTTCTAAGGAGGCATCTCAGTGATGCCTGCATCACATTGAGCTCCTCTGCTTCGTTTGTCTTGAAAGAATTGGCTACTACAGTTAAGAC CATGAGAAAATCATCAGAAATAGACTTCTCAATTGGAGAGATGCAATTTGCAGTACTAAAACTTGAAAACGCCATGAAATCTCTTCCTAACCACCTTGTT GCCACACCATCCTCAACATCGGATGGAGATGCCAAAGCAGAGCCTATCAGAAAAACCACTACACCATCATCTGTCATGGACATTCTTCCACTAGCAACAC TGGTATCTATGCTAACAGAAACGGCAGCAAGAATCAAAGAAATTGCTGATGAAGTCAATGAGCTTGCAAAGCTTGCAGCTTTCAAGCCTCCTAACACCAA AAAGGCTAGCCAAAGCCAATCCAGCAACCAAGTTGACGAGCCATCAAACAATGAAGAACGCACCAAAGGTCTGGGATAA
AA sequence Show only first row Show all	>Potri.002G174600.1 pacid=42776805 polypeptide=Potri.002G174600.1.p locus=Potri.002G174600 ID=Potri.002G174600.1.v4.1 annot-version=v4.1 MVMGNRAPNKLEWRINVRNGTSEILQPKTGLVHRVWSWLKGLLGEFMLKIWNFLEKARNIAVAEPKKVIHCLKVGVTLTIVSLFYYMRPLYEGVGGNAMW AIMTVVVVFEYTVGATLYKCINRAIGTFLAGSLGVGVHWAASHSGDKLEPIILGISVFLLASAATFSRFIPSVKARFDYGVLIFILTFSLVSVSGYRVDK LIDVARQRLSTIAIGASLCVLMCMLFYPIWAGKELHNLIHRNLEKLADALDGCTAEYFTDSSAGDSWKKIGGYKCVLNSKAAEDSMAGFARWEPAHGRFN FRHPWKQYLKVGASLRSCAYCIETLDGCLNSEIKAPELLRRHLSDACITLSSSASFVLKELATTVKTMRKSSEIDFSIGEMQFAVLKLENAMKSLPNHLV ATPSSTSDGDAKAEPIRKTTTPSSVMDILPLATLVSMLTETAARIKEIADEVNELAKLAAFKPPNTKKASQSQSSNQVDEPSNNEERTKGLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00910			Aluminium activated malate tra...		Potri.002G174600 [exp]	0	1
					Potri.013G070350 [exp]	3.16	0.9711
AT4G26010			Peroxidase superfamily protein...		Potri.013G066800 [exp]	4.24	0.9727
AT4G21895			DNA binding (.1)		Potri.011G001901 [exp]	4.47	0.9543
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Potri.015G090000 [exp]	6.00	0.9614
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120300 [exp]	7.48	0.9580
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Potri.014G041800 [exp]	9.64	0.9641
AT3G06880			Transducin/WD40 repeat-like su...		Potri.005G240100 [exp]	10.95	0.9613
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006200 [exp]	14.14	0.9614
AT2G34930			disease resistance family prot...		Potri.001G262800 [exp]	15.65	0.9423
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120601 [exp]	20.04	0.9278

Compare expression of checked genes

Potri.002G174600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.