Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01225 333 / 4e-116 NC domain-containing protein-related (.1) AT4G00905 318 / 4e-110 NC domain-containing protein-related (.1) AT5G06370 232 / 3e-76 NC domain-containing protein-related (.1) AT3G02700 224 / 2e-73 NC domain-containing protein-related (.1) AT5G16360 184 / 2e-57 NC domain-containing protein-related (.1) AT5G16330 177 / 5e-55 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101300 [exp] 441 / 7e-159 AT1G01225 352 / 2e-123 NC domain-containing protein-related (.1) Potri.006G203300 [exp] 237 / 3e-78 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.004G078700 [exp] 229 / 5e-75 AT3G02700 343 / 3e-120 NC domain-containing protein-related (.1) Potri.017G142300 [exp] 222 / 2e-72 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.013G043100 [exp] 79 / 1e-17 AT5G06370 87 / 1e-20 NC domain-containing protein-related (.1) Potri.005G056300 [exp] 48 / 5e-07 AT5G16330 49 / 1e-07 NC domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030231 [exp] 360 / 9e-127 AT1G01225 360 / 1e-126 NC domain-containing protein-related (.1) Lus10005981 [exp] 355 / 2e-124 AT1G01225 360 / 8e-127 NC domain-containing protein-related (.1) Lus10029402 [exp] 241 / 2e-79 AT5G06370 410 / 3e-146 NC domain-containing protein-related (.1) Lus10010962 [exp] 169 / 1e-51 AT3G02700 268 / 8e-91 NC domain-containing protein-related (.1) Lus10004198 [exp] 106 / 6e-28 AT5G06370 210 / 1e-68 NC domain-containing protein-related (.1) Lus10031362 [exp] 59 / 6e-11 AT3G02700 69 / 6e-18 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF04970 [poplar] [flax] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G174700.1 pacid=42777802 polypeptide=Potri.002G174700.1.p locus=Potri.002G174700 ID=Potri.002G174700.1.v4.1 annot-version=v4.1 ATGGGTTTCCTTAGTCATAGAGTGGAGAGAAGTGAAATCAAACCAGGAGATCATATCTATTCTTACAGAGCTGTTTTCACTTACTCTCACCATGGCATCT TTGTTGGTGGAAGCAAGGTGGTCCATTTTACTCCCAGGCAGATTGCAAATTCAAGCTCTGATACATCTTCTGACTTCTATAATTCAATGTCAAGCATTCC ATCATCCTGTGAAACCTTTCCTGACTGTGGATTCCGACAACTTGATAGTGGTGTAGTCCTCTCATGCCTGGACTGCTTCCTCAAAAAAGGATCTCTTTAC TGCTTTGAGTATGGGGTGCCTCCTACAGTTTTTCTTGCAAAAGTACGTGGAGGCACGTGCACCACTGCAGCATCTGACCCCCCAGAAACTGTTATCCACA GAGCAATGTATCTTCTTCAAAATGGATTTGGCAATTACGACGTGTTTCAGAACAACTGCGAGGATTTTGCAATGTACTGCAAGACAGGTCTTCTGGTAAT GGACAGGCTGGGGGTTGGAAGAAGTGGTCAAGCTTCTACTGTTATTGGTGCTCCATTGGCTGCAATTCTTTCATCTCCTTTAAACTTGTTAATACCTAGC CCTGTTGGTGTTGCTACGGTAACAGCTGGAATGTTCTGCATGAGCAGATATGCTACTGATATAGGTGTCCGTAGTGATGTAATCAAGGTGGCTGTGGAAG ACTTGGCTATGAAACTGAGCTGGGCTGGCCCTTTGGAGGAAGTACCTGAAGATGATGATGCTTCTGGTGCGATGATTGCCAGGTGA
AA sequence Show only first row Show all	>Potri.002G174700.1 pacid=42777802 polypeptide=Potri.002G174700.1.p locus=Potri.002G174700 ID=Potri.002G174700.1.v4.1 annot-version=v4.1 MGFLSHRVERSEIKPGDHIYSYRAVFTYSHHGIFVGGSKVVHFTPRQIANSSSDTSSDFYNSMSSIPSSCETFPDCGFRQLDSGVVLSCLDCFLKKGSLY CFEYGVPPTVFLAKVRGGTCTTAASDPPETVIHRAMYLLQNGFGNYDVFQNNCEDFAMYCKTGLLVMDRLGVGRSGQASTVIGAPLAAILSSPLNLLIPS PVGVATVTAGMFCMSRYATDIGVRSDVIKVAVEDLAMKLSWAGPLEEVPEDDDASGAMIAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01225			NC domain-containing protein-r...		Potri.002G174700 [exp]	0	1
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Potri.006G035900 [exp]	1.00	0.8338
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G053800 [exp]	3.87	0.8051	Pt-IAA8.1
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Potri.006G051800 [exp]	4.00	0.8222	ACD11.1
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Potri.017G076700 [exp]	6.00	0.8142	PtrTrxh2
AT3G13750		BGAL1	beta-galactosidase 1, beta gal...		Potri.001G200400 [exp]	9.59	0.8077	BGAL1.1
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.010G101400 [exp]	10.39	0.7774
AT1G71440		TFCE, PFI	TUBULIN-FOLDING COFACTOR E, tu...		Potri.019G072700 [exp]	11.22	0.8024	Pt-PFI.1,TFCFE
AT1G52190			Major facilitator superfamily ...		Potri.001G185700 [exp]	19.79	0.8018
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	25.23	0.7861
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	25.57	0.8025

Compare expression of checked genes

Potri.002G174700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.