Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46600 174 / 4e-57 Calcium-binding EF-hand family protein (.1) AT4G27280 107 / 8e-31 Calcium-binding EF-hand family protein (.1) AT5G54490 106 / 2e-30 PBP1 pinoid-binding protein 1 (.1) AT4G14640 56 / 1e-10 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT3G51920 55 / 3e-10 CML9, CAM9, ATCML9 CALMODULIN LIKE PROTEIN 9, calmodulin 9 (.1) AT1G66410 55 / 5e-10 ACAM-4, CAM4 calmodulin 4 (.1.2) AT5G37780 54 / 5e-10 ACAM-1, TCH1, CAM1 TOUCH 1, calmodulin 1 (.1.2.3) AT3G43810 52 / 3e-09 CAM7 calmodulin 7 (.1) AT3G22930 52 / 4e-09 CML11 calmodulin-like 11 (.1) AT2G27030 51 / 5e-09 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G101700 [exp] 213 / 2e-72 AT2G46600 181 / 3e-60 Calcium-binding EF-hand family protein (.1) Potri.013G151000 [exp] 132 / 1e-40 AT5G54490 147 / 7e-47 pinoid-binding protein 1 (.1) Potri.011G129100 [exp] 131 / 2e-40 AT4G27280 124 / 5e-38 Calcium-binding EF-hand family protein (.1) Potri.011G039500 [exp] 127 / 1e-38 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.011G039600 [exp] 127 / 1e-38 AT4G27280 127 / 6e-39 Calcium-binding EF-hand family protein (.1) Potri.004G027200 [exp] 125 / 5e-38 AT5G54490 127 / 3e-39 pinoid-binding protein 1 (.1) Potri.001G412077 [exp] 124 / 1e-37 AT4G27280 117 / 4e-35 Calcium-binding EF-hand family protein (.1) Potri.011G125300 [exp] 120 / 4e-36 AT5G54490 122 / 5e-37 pinoid-binding protein 1 (.1) Potri.019G120600 [exp] 119 / 1e-35 AT5G54490 147 / 6e-47 pinoid-binding protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005985 [exp] 167 / 1e-54 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10030227 [exp] 167 / 1e-54 AT2G46600 167 / 1e-54 Calcium-binding EF-hand family protein (.1) Lus10018511 [exp] 129 / 3e-39 AT4G27280 140 / 2e-44 Calcium-binding EF-hand family protein (.1) Lus10031588 [exp] 128 / 5e-39 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10033753 [exp] 128 / 5e-39 AT4G27280 133 / 3e-41 Calcium-binding EF-hand family protein (.1) Lus10039724 [exp] 126 / 2e-38 AT4G27280 139 / 1e-43 Calcium-binding EF-hand family protein (.1) Lus10036734 [exp] 100 / 4e-28 AT5G54490 107 / 2e-31 pinoid-binding protein 1 (.1) Lus10041179 [exp] 54 / 6e-10 AT4G14640 174 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10024830 [exp] 54 / 9e-10 AT4G14640 176 / 2e-57 calmodulin-like 8, calmodulin 8 (.1) Lus10039391 [exp] 54 / 1e-09 AT4G14640 268 / 1e-93 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF13833 [poplar] [flax] EF-hand_8 EF-hand domain pair
Representative CDS sequence Show only first row Show all	>Potri.002G174900.1 pacid=42778146 polypeptide=Potri.002G174900.1.p locus=Potri.002G174900 ID=Potri.002G174900.1.v4.1 annot-version=v4.1 ATGTCCACACCACACTCTTGTTTATACCCACTGATAGAGGGATCCTTAATTTTCTCATCTAAAGAAATGGAGAAGGATCACAATGGGATGAAAACTGCAG CAAGCAGTGAGTATCAGGACTTGTTACCGGTGATGGCGGAGAAACTTGATGCAGAGGCTTTTGTGTCTGAATTATGTGGGGGCTTTCGTCTTCTGGCAGA CCCTGAAAAGGGGTTGATTACATCAGATAGCCTGCGAAGGAATTCGGCGCTTCTAGGGATGGAAGGGATGACGAAGGAAGATGCGGAGGCTATGGTGAGA GAAGGAGATCTTGATGGAGATGGAGTACTCAATGAAACAGAATTTTGTACTCTGATGGTGAGACTCAGTCCTGAGATGATGCAGGATGCTGAAACCTGGC TCGAGAAAGCACTAGAAAACAAGAACTAA
AA sequence Show only first row Show all	>Potri.002G174900.1 pacid=42778146 polypeptide=Potri.002G174900.1.p locus=Potri.002G174900 ID=Potri.002G174900.1.v4.1 annot-version=v4.1 MSTPHSCLYPLIEGSLIFSSKEMEKDHNGMKTAASSEYQDLLPVMAEKLDAEAFVSELCGGFRLLADPEKGLITSDSLRRNSALLGMEGMTKEDAEAMVR EGDLDGDGVLNETEFCTLMVRLSPEMMQDAETWLEKALENKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46600			Calcium-binding EF-hand family...		Potri.002G174900 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134425 [exp]	13.52	0.9316
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134500 [exp]	13.56	0.9360
AT4G18930			RNA ligase/cyclic nucleotide p...		Potri.001G324500 [exp]	19.18	0.8901
AT1G66920			Protein kinase superfamily pro...		Potri.012G003400 [exp]	20.78	0.9311
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Potri.004G049800 [exp]	21.02	0.9152	Pt-GRX.2
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019300 [exp]	22.24	0.9108
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016700 [exp]	23.87	0.9006
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.008G174900 [exp]	29.54	0.9233
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.008G041400 [exp]	30.00	0.9286	Pt-MLO12.2
AT1G66920			Protein kinase superfamily pro...		Potri.012G003500 [exp]	45.82	0.9224

Compare expression of checked genes

Potri.002G174900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.