Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CYP78.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46660 694 / 0 CYP78A6 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) AT1G01190 665 / 0 CYP78A8 "cytochrome P450, family 78, subfamily A, polypeptide 8", cytochrome P450, family 78, subfamily A, polypeptide 8 (.1) AT3G61880 662 / 0 CYP78A9 cytochrome p450 78a9 (.1.2) AT1G74110 472 / 3e-162 CYP78A10 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) AT1G13710 454 / 2e-155 CYP78A5, KLUH KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) AT5G09970 442 / 1e-150 CYP78A7 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) AT5G07990 278 / 6e-87 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G40890 253 / 2e-77 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G22710 234 / 3e-70 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT4G31940 234 / 4e-70 CYP82C4 "cytochrome P450, family 82, subfamily C, polypeptide 4", cytochrome P450, family 82, subfamily C, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102700 [exp] 900 / 0 AT2G46660 723 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.001G083900 [exp] 726 / 0 AT2G46660 692 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.003G146800 [exp] 711 / 0 AT2G46660 659 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Potri.005G200400 [exp] 462 / 2e-158 AT5G09970 681 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.002G060900 [exp] 461 / 6e-158 AT5G09970 703 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.007G081200 [exp] 457 / 1e-156 AT5G09970 743 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.005G084500 [exp] 457 / 1e-156 AT5G09970 759 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Potri.001G054800 [exp] 431 / 8e-146 AT1G74110 502 / 8e-174 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1) Potri.003G173500 [exp] 428 / 2e-145 AT1G74110 491 / 3e-170 "cytochrome P450, family 78, subfamily A, polypeptide 10", cytochrome P450, family 78, subfamily A, polypeptide 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030216 [exp] 683 / 0 AT2G46660 697 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10005995 [exp] 681 / 0 AT2G46660 708 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10017334 [exp] 630 / 0 AT3G61880 656 / 0.0 cytochrome p450 78a9 (.1.2) Lus10001670 [exp] 561 / 0 AT2G46660 588 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 6", cytochrome P450, family 78, subfamily A, polypeptide 6 (.1) Lus10035844 [exp] 435 / 2e-147 AT5G09970 729 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10036627 [exp] 433 / 1e-146 AT5G09970 735 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10005780 [exp] 429 / 3e-145 AT5G09970 696 / 0.0 "cytochrome P450, family 78, subfamily A, polypeptide 7", cytochrome P450, family 78, subfamily A, polypeptide 7 (.1) Lus10015788 [exp] 409 / 6e-139 AT1G13710 471 / 1e-163 KLUH, "cytochrome P450, family 78, subfamily A, polypeptide 5", cytochrome P450, family 78, subfamily A, polypeptide 5 (.1) Lus10020847 [exp] 261 / 9e-81 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10033524 [exp] 258 / 1e-79 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.002G175200.1 pacid=42779669 polypeptide=Potri.002G175200.1.p locus=Potri.002G175200 ID=Potri.002G175200.1.v4.1 annot-version=v4.1 ATGAGAACAGACATAGATAACTTCTGGATCTTTGCTTTGGCCTCCAAATGCAGAGTCTTTACACAAGAAAATATTGCATGGTCGCTTTTGATCATGGGTT TAGCTTGGATAGCCACTACCCTTATTTACTGGGCATACCCTGGTGGTCCTGCTTGGGGCAAATACAAACTCAAAAACACTTCCTTCACAATTTCTAAGCC AATTCCAGGTCCCAGGGGATTGCCTCTTATAGGCGGCATGAGGCTTATGACCTCCTTAGCACATCACAAGATTGCAGCGGCTGCAGATGCATGCAAAGCC AGGAGGCTCATGGCGTTTAGCCTTGGTGATACTCGTGTTATCGTGACATGCAATCCTGATGTGGCTAAAGAAATACTGAACAGTTCGGTGTTTGCAGATC GTCCAGTTAAAGAATCTGCTTATAGCCTAATGTTCAATAGAGCAATTGGGTTCGCTCCTTATGGTGTTTACTGGCGAACCCTTAGAAAAATAGCTTCTAC ACACCTTTTCTGCCCCAAACAAATCAAAACTGCGGCGTCTCAAAGACGCCGAATTGCTTCTGAAACGGTGTCCATGTTCAATGACCATGAAGGGAGTGGT TTCACCGTTCGTGGGATACTCAAGAGAGCTTCACTTAATAACATGATGTGCTCAGTTTTTGGACGCGAGTATGAATTGGATTCATGTAATAGTGAAGTTG AAGAACTGAGAGCTCTAGTTGATGAAGGGTACGATTTATTGGGTACACTTAACTGGACCGACCACCTTCCTTGGCTGGCGGATTTTGACCCTCAAAAAAT CCGATTCAGATGCTCAAATCTCGTGCCAAAAGTGAACCGGTTTGTCAGCCGAATCCTGGCTGAGCATAGAGCTCAAGCTGGAAATGAAACCCCGGATTTC GTTGATGTTTTGCTGTCTCTTCAAGGCCACGATAAATTATCGGACTCCGATATGATTGCCGTCCTTTGGGAAATGATTTTCAGGGGCACTGATACGGTGG CAGTTTTGATGGAGTGGATTCTAGCTAGAATGGTACTTCATCCTGATGTTTTATCAAAGGTCCATGATGAGCTTGACAAAGTTGTTGGAAGATCAAGGGC CGTAGCTGAATCTGATATCACGGCAATGGTGTATCTCCAGGCAGCAGTGAAGGAAGTGTTGAGGCTACACCCACCTGGTCCACTTCTCTCGTGGGCCAGG CTTGCCATCACTGATACAACCATAGATGGGTATCACGTGCCTAAAGGGACCACAGCAATGGTTAACATGTGGGCCATTTCAAGGGACCCAGATTCTTGGG AGGACCCGCTTGAATTTATGCCTGAGAGATTCGTGACTAAGAAGGGTGAGCTGGAGTTTTCTGTTCTTGGGTCGGATCTAAGGCTTGCTCCGTTTGGTTC CGGTAGGCGAACCTGCCCGGGAAAGACATTGGGCTTAACTACGGTGACCTTTTGGGTTGCGTCACTACTACACGAGTATGAATGGCTGCCGTGCGATGGA AATAAAGTTGACCTATCAGAAGTACTGGGTCTGTCCTGTGAGATGGCAAATCCATTGACCGTTAAACTGCGGCCCAGGCGTTCCCATTATAAGCCCACTG TACTAGGTGTACAGAACTACGTACTAGATGTCTAG
AA sequence Show only first row Show all	>Potri.002G175200.1 pacid=42779669 polypeptide=Potri.002G175200.1.p locus=Potri.002G175200 ID=Potri.002G175200.1.v4.1 annot-version=v4.1 MRTDIDNFWIFALASKCRVFTQENIAWSLLIMGLAWIATTLIYWAYPGGPAWGKYKLKNTSFTISKPIPGPRGLPLIGGMRLMTSLAHHKIAAAADACKA RRLMAFSLGDTRVIVTCNPDVAKEILNSSVFADRPVKESAYSLMFNRAIGFAPYGVYWRTLRKIASTHLFCPKQIKTAASQRRRIASETVSMFNDHEGSG FTVRGILKRASLNNMMCSVFGREYELDSCNSEVEELRALVDEGYDLLGTLNWTDHLPWLADFDPQKIRFRCSNLVPKVNRFVSRILAEHRAQAGNETPDF VDVLLSLQGHDKLSDSDMIAVLWEMIFRGTDTVAVLMEWILARMVLHPDVLSKVHDELDKVVGRSRAVAESDITAMVYLQAAVKEVLRLHPPGPLLSWAR LAITDTTIDGYHVPKGTTAMVNMWAISRDPDSWEDPLEFMPERFVTKKGELEFSVLGSDLRLAPFGSGRRTCPGKTLGLTTVTFWVASLLHEYEWLPCDG NKVDLSEVLGLSCEMANPLTVKLRPRRSHYKPTVLGVQNYVLDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.002G175200 [exp]	0	1	Pt-CYP78.1
AT5G09220		AAP2	amino acid permease 2 (.1)		Potri.013G103500 [exp]	2.00	0.9205
AT1G28200		FIP1	FH interacting protein 1 (.1)		Potri.002G184100 [exp]	3.16	0.8700
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.001G182700 [exp]	3.46	0.8936
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	8.66	0.8388
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060200 [exp]	8.83	0.8607
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.003G002500 [exp]	10.95	0.8398
AT5G15100		ATPIN8, PIN8	PIN-FORMED 8, Auxin efflux car...		Potri.004G124200 [exp]	12.64	0.8750
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.013G060200 [exp]	12.84	0.8688	Pt-MYR1.2
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.003G096300 [exp]	13.85	0.8568
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	15.87	0.8726

Compare expression of checked genes

Potri.002G175200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.