Plant FIBer expression Database

Potri.002G175400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46630 107 / 2e-25 unknown protein
AT1G75260 55 / 8e-08 oxidoreductases, acting on NADH or NADPH (.1)
AT1G63310 42 / 0.0001 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G102466
[exp]
326 / 1e-107 AT2G46630 114 / 1e-27 unknown protein
Potri.011G149100
[exp]
57 / 9e-10 AT1G63310 95 / 2e-25 unknown protein
Potri.001G452900
[exp]
47 / 4e-06 AT1G63310 92 / 3e-24 unknown protein
Potri.005G228400
[exp]
44 / 0.0001 AT1G75260 103 / 2e-23 oxidoreductases, acting on NADH or NADPH (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030217
[exp]
106 / 9e-25 AT2G46630 51 / 1e-06 unknown protein
Lus10005994
[exp]
106 / 1e-24 AT2G46630 / unknown protein
Lus10012616
[exp]
57 / 7e-09 AT1G75260 71 / 3e-14 oxidoreductases, acting on NADH or NADPH (.1)
PFAM info
Representative CDS sequence
>Potri.002G175400.1 pacid=42778502 polypeptide=Potri.002G175400.1.p locus=Potri.002G175400 ID=Potri.002G175400.1.v4.1 annot-version=v4.1
ATGTCAAACCAACCTGCCCCTGCTCGTCCATGGTTCCGTTTGCCATCAATAGCTCGGCCAACTGCCCCTACAACAACTCCAACTCCAGAGCCACCACCTC
CACAACCCCGTCCAGCTCTTGCTCGACCTGCATTTAGGCCAACTGCTCCACCTCAGCCAGTGCCGACACAGCCTCGAGAAACCACTCCTCCTGCTGCGAC
AGGACCACAGGCTGTAGCTGCTCCCACACCCGAACCAGTGCCACCTGTTTCCGGTGTTGCTTCAGTTCCAACATCTCCAGTTGCAAGAGCTGCAGTTGGT
GTTGCGTCAGTACCAACATCTCCAGCTTCAAGGGCACCTGCTCCTTCATCTTCAGTGCCCACTTCTCCTGTCCCAACTTCCGCAGTGCTTCCACTCACCA
CCTCTTCACTTCCACCTTCTCCAACCCCCAAACCAGCACCAACTTCCTCTTCGGTTCCAACCTCTCCTGCCACTAAGCCAATGACCACCACATCCTCAGT
GCCCACTTCCCCTGCCCCTAAGCCAGTGACAACCACATCCTCAGTGCCAACTTCTTATGCCTCTAAGTCAGTGACAGTCACATCCTCAGTGCAAAATTCT
CCAGCTACTAAAGCTGTAACCACCAATGCAACTCGTGTGCCTAGCCCTGGACCATCTCTAAGAACCATCAAGCCAGCAGTTCAAACCCCACCTCAATCAC
CAAAGCCTAGGCCCACTGCTCCACCACCTTCTCCTCTAACACTTCCACCTTCCCAAGTAAAATCTTATGCAGATCTCGAACCCAAGATTCCATTAGTGGC
AGAGCAAAAAACCGTGTTGGTTCAAAAGACTTTTGACAAGCCTAAGGTGGCGCGCGATTCACAGAGGGACTTTGCAGACAGTCTCAGCTCTGGCATCGCT
CGTCTTGCAAAGCAAGAAACTACTAAAGATGTTCAAACAAAGGAGAAAGGTAACCGCAAGAAGAATTCTTCAGATTCTGAGGATGGTGGCATGAAGGTAA
TTACAATTGCCGGTGAAAACAAAGGTGCTTTCATGGAAGTTATCCGTTCTCCCAAGAAACAAGTTTTTGAAGGAACTTCTCATTTTCTCCACAAGAAGGG
TAATCCTAAAAGTGAAGGCAGTGACAGCAGCAGTAGCGAGGAAGGCAACAGCAAGAAGAAGGACAAGAACCCCAATGGAAAAGCAATGGGGCCATCTCCT
TTGAGTTCATTTATGAACAGTAATGTGCAAGGTGTTAACAATTCAATCGTTTACAATTCTTCATGCAGCCATCATGATCCTGGGGTGCATGTTGCTCTCT
CTCGGAAACCTGCTGGAGCTGCTGCATTCCATGTCAAGGACCATGGCAATGACAACCAGAGTTAA
AA sequence
>Potri.002G175400.1 pacid=42778502 polypeptide=Potri.002G175400.1.p locus=Potri.002G175400 ID=Potri.002G175400.1.v4.1 annot-version=v4.1
MSNQPAPARPWFRLPSIARPTAPTTTPTPEPPPPQPRPALARPAFRPTAPPQPVPTQPRETTPPAATGPQAVAAPTPEPVPPVSGVASVPTSPVARAAVG
VASVPTSPASRAPAPSSSVPTSPVPTSAVLPLTTSSLPPSPTPKPAPTSSSVPTSPATKPMTTTSSVPTSPAPKPVTTTSSVPTSYASKSVTVTSSVQNS
PATKAVTTNATRVPSPGPSLRTIKPAVQTPPQSPKPRPTAPPPSPLTLPPSQVKSYADLEPKIPLVAEQKTVLVQKTFDKPKVARDSQRDFADSLSSGIA
RLAKQETTKDVQTKEKGNRKKNSSDSEDGGMKVITIAGENKGAFMEVIRSPKKQVFEGTSHFLHKKGNPKSEGSDSSSSEEGNSKKKDKNPNGKAMGPSP
LSSFMNSNVQGVNNSIVYNSSCSHHDPGVHVALSRKPAGAAAFHVKDHGNDNQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46630 unknown protein Potri.002G175400
[exp]
0 1
AT3G18670 Ankyrin repeat family protein ... Potri.007G110000
[exp]
4.47 0.9451
AT2G35585 unknown protein Potri.010G101500
[exp]
10.48 0.9276
AT3G30340 nodulin MtN21 /EamA-like trans... Potri.011G149000
[exp]
10.95 0.9010
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.001G340600
[exp]
12.16 0.9369
AT1G77700 Pathogenesis-related thaumatin... Potri.005G173900
[exp]
13.41 0.9244
AT5G24318 O-Glycosyl hydrolases family 1... Potri.012G017800
[exp]
13.85 0.9368
AT3G01680 SEOR1, SEOb Sieve-Element-Occlusion-Relate... Potri.001G340500
[exp]
14.14 0.9328
AT2G23950 Leucine-rich repeat protein ki... Potri.006G179400
[exp]
19.18 0.9060
AT3G15680 Ran BP2/NZF zinc finger-like s... Potri.006G251300
[exp]
21.84 0.9165
AT2G27035 AtENODL20 early nodulin-like protein 20 ... Potri.017G088500
[exp]
21.90 0.8840

Potri.002G175400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.