Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76390 200 / 3e-53 PUB43 plant U-box 43, ARM repeat superfamily protein (.1.2) AT1G20780 197 / 3e-52 ATPUB44, SAUL1 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) AT1G68940 164 / 6e-41 Armadillo/beta-catenin-like repeat family protein (.1.2.3) AT2G28830 91 / 2e-18 AtPUB12 PLANT U-BOX 12 (.1) AT3G46510 79 / 1e-14 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G51270 79 / 1e-14 U-box domain-containing protein kinase family protein (.1) AT1G49780 78 / 1e-14 PUB26 plant U-box 26 (.1) AT5G65920 73 / 5e-13 ARM repeat superfamily protein (.1) AT3G19380 73 / 5e-13 PUB25 plant U-box 25 (.1) AT4G36550 73 / 7e-13 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102000 [exp] 1580 / 0 AT1G76390 207 / 1e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.012G019900 [exp] 1040 / 0 AT1G76390 206 / 3e-55 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.003G201000 [exp] 358 / 8e-109 AT1G68940 119 / 2e-27 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.001G024600 [exp] 347 / 9e-105 AT1G20780 107 / 1e-23 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.010G079200 [exp] 343 / 7e-102 AT1G20780 158 / 1e-39 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Potri.001G069501 [exp] 258 / 7e-72 AT1G68940 132 / 5e-31 Armadillo/beta-catenin-like repeat family protein (.1.2.3) Potri.002G007800 [exp] 238 / 7e-66 AT1G76390 1028 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.005G253400 [exp] 238 / 7e-66 AT1G76390 963 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Potri.010G136500 [exp] 188 / 9e-49 AT1G68940 913 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005988 [exp] 1166 / 0 AT1G76390 244 / 4e-68 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030224 [exp] 602 / 0 AT1G20780 127 / 1e-29 ARABIDOPSIS THALIANA PLANT U-BOX 44, senescence-associated E3 ubiquitin ligase 1 (.1) Lus10034132 [exp] 320 / 5e-95 AT1G76390 162 / 5e-41 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10043453 [exp] 312 / 3e-92 AT1G76390 158 / 1e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10039402 [exp] 310 / 2e-89 AT1G76390 157 / 4e-39 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013216 [exp] 229 / 7e-62 AT1G76390 1034 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10030734 [exp] 162 / 3e-41 AT1G76390 854 / 0.0 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10018246 [exp] 162 / 3e-40 AT1G76390 272 / 8e-78 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10040659 [exp] 152 / 3e-37 AT1G76390 286 / 1e-82 plant U-box 43, ARM repeat superfamily protein (.1.2) Lus10013050 [exp] 140 / 2e-33 AT1G68940 900 / 0.0 Armadillo/beta-catenin-like repeat family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.002G175800.3 pacid=42778789 polypeptide=Potri.002G175800.3.p locus=Potri.002G175800 ID=Potri.002G175800.3.v4.1 annot-version=v4.1 ATGATGGCACTAGATGTTATTACTAGTGCATGTTCTTTTCCAGCTGATGAGTGCCTTTCACAAATTGTGGAGGGGATGATGGAGGTTGTATATGCTGCAA ACAATGTCCTTGTTAAGAAGGAGAGTTTTAAGGAATTTTCTGTCTACTTGGAAAGGGTTGCACCTGTTCTAAAAGAGCTGAATAAGAAAGACATTAGTCA TTCTAGGAGCCTTAACAGTGCCATTGAGATCCTAAATCAGGAAATTAAAGCTGCAAAGCAGCTGACTGCTGATTGCACCAAGAGAAACAAAGTGTATCTC CTAATGAATTCTCGGACGATAATTAAGAACCTAGAGGACATCGCAAGAGAGATAAGCCGAGCTCTAGGTCTTCTTCCTTTGGCCTCTTTGGATCTTTCAG CTGGTATAATTGAAGAGATTGAAAAGCTTCGTGATAGTATGCAGAGAGCTGAGTTCAAGGCTGCTATAGCAGAAGAAGAGATTTTGGTGAAAATTGAGTC CGGAATACAGGAGAGGGTTGTTGATCGTTCTTATGCCAATAAGTTACTGTTTCACATAGCTGAGGCTGTTGGGATCTCAACTGACAGGTCTGCATTGAAG AAAGAGTTTGAAGAATTCAAGAGTGAGATTGAAAATGCCCGGTTAAGGAAGGATCAGGCTGAAGCTATACAAATGGATCAGATAATTGCTTTGTTAGAAA GGGCAGATGCTGCTTCGTCTCCTAAGGAAAAAGAGATAAAGTATTTCACCAAACGGAAGTCTTTGGGTAGTCAACCATTGGAACCTCTCCAGTCTTTTTA TTGCCCAATTACACGGGATGTTATGGAGGACCCTGTGGAGACCTCTTCGGGACAGACATTTGAGAGAAGTGCAATAGAAAAATGGCTTGCAGACGGCCAT GAAATGTGTCCTCTGACCATGACCCCTCTAGACACATCAATTTTGAGGCCTAACAAAACTCTTAGGCAATCAATAGAAGAATGGAAGGATAGAAACACCA TGATTAAAATTGCTTCCATGAAATCAAAACTTGTATCTGAAGAAGAAGAAGAAGAAGAAGTGCTTCAATGCCTAGAACAGTTAGAGGATCTCTGTGAACA AAGAGACCAACATCGGGAATGGGTGATATTGGAGAATTATATACCACAGTTTATCCAGCTTCTTGGAGCAAAAAATCCAGATATAAGGAATCGTGCTCTA GTCATCCTTTGCATTCTTGCAAAAGATAGTGATTATGCCAAGGAAAGAGTTGCAAATGTTGATAATGCAATCGAGTCCATTGTTCGATCTCTTGGACGCC GTATTGGGGAAAGGAAGTTAGCAGTGGCATTACTGTTGGAATTGTCAAAGTGTAACTTGGTAAGGGATGGCATTGGAAAGGTTCAGGGTTGTATTCTCCT CTTAGTGACCATGGCAAGCAGTGATGACAATCAAGCTGCCGCAGATGCCCAAGAGCTATTGGAGAATCTTTCGTTCTCTGATCCCAACATCATACAAATG GCTAAGGCAAATTACTTCAAACATTTGCTGCAGCGTCTATCCACAGGACCAGAAGATGTGAAAACGATCATGGCATCAACTCTGGCAGAATTGGAGTTAA CTGATCATAACAAAGCATCTTTGTTTGAAGGAGGTGCTCTGGGTCCTCTTCTTCACTTGGTATCATGTGGTGACATTCCAATGAAAAAAGTGGCTGTCAA AGCTCTTCAGAACCTATCAAGCTTACCTGAAAATGGCCTGCAGATGATTAAAGAAGGTGCAGTTCAGCCATTACTTGGCCTTCTCTTTCAGCACATCTCT TCGTTTTCAAGTTTACGTGAGCAGGTGGCTACCACAATCATGCACCTTGCTGTATCAACAGTATCTCAAGAATCCAGCCCGACGCTGGTTTCATTGTTGG AATCTGATGATGACATTTTCAAGCTCTTCTCATTAATTAACTTAGCAGGGCCTGATGTGCAGCAAAACATTCTTCTAGCTTTCCATGCCTTATGCCAGTC CCCATCAGCATCAAATATCAAGGCCAAGCTGACAGAGTGCTCAGCCATGCAAGTTTTGGTCCAGTTATGTGAGCACGACGACCCTAATGTGAGAGCAAAT GCTGTGAAGCTGTTATATTGCTTGATAGAAGATGACAATGAAGCCATCATACTAGAGCATGTGGGTCAGAAATGCATCGAGACCTTGCTCCGGATTATCC AATTTTCTAATGTTGAAGAAGTGATTACTTATGCGATGGGTATTATCTCAAACCTCCCAGAAAAGCACCAGATCACCCAGTGGCTTCTGGATGCTGGGGC ACTTCCTGTGATCTCTAAATTTCTCCCTGATAGCAAGCACAGTGATCCCCGTAAAAATCACTTAGTCGAAAACGCCACTGGAGCCATGCGGCATTTTACT GCTTCAACAAATCCAGAATGGCAAAAGAGAGCTGCAGAAGCTGGCATAATTCCTGTGTTAGTGCAGCTACTGGACTTTGGAACTACCATGATGAAGAAAT GTGCTGCAATTTCTCTTGCTCGTTTTTCGGAGAGCTCACTAGCACTTAGTCGTCCAATACCGAAGCACAAGGGATTCTGGTGCTTCTCTGTTCCACCTGA AACTGGCTGCCCGATTCATGAGGGAATATGTGCTGTTGAATCATCATTTTGCCTTGTGGAAGCTGATGCGGTAGGACCACTTGTGAGGGTTCTTCAAGAT CCAGATCCTGGAACCTGTGAGGCTTCTTTAGATGCCCTGCTGACATTAATTGATGGCCTTAAACTTCAAAATGGTAGTAAGGTGCTTGCAGAAGCAAATG CCATACCACCAATTATTGGATTTCTTGGTTCATCATCCCTCAGACTGCAGGAAAAGGCTCTAAACACTCTAGAAAGGATCTTCCGGCTGCCAGAGTTAAA ACAAAAGTATGGGTCCTCTGCGCAGATGCCTTTGGTTGACCTGACACAACGGGGTAACAGCAGAATGAAGTCTCTTTCAGCCAGAATACTTGCTCATTTG AACGTACTTCATGAACAGTCCTCTTACTTCTAA
AA sequence Show only first row Show all	>Potri.002G175800.3 pacid=42778789 polypeptide=Potri.002G175800.3.p locus=Potri.002G175800 ID=Potri.002G175800.3.v4.1 annot-version=v4.1 MMALDVITSACSFPADECLSQIVEGMMEVVYAANNVLVKKESFKEFSVYLERVAPVLKELNKKDISHSRSLNSAIEILNQEIKAAKQLTADCTKRNKVYL LMNSRTIIKNLEDIAREISRALGLLPLASLDLSAGIIEEIEKLRDSMQRAEFKAAIAEEEILVKIESGIQERVVDRSYANKLLFHIAEAVGISTDRSALK KEFEEFKSEIENARLRKDQAEAIQMDQIIALLERADAASSPKEKEIKYFTKRKSLGSQPLEPLQSFYCPITRDVMEDPVETSSGQTFERSAIEKWLADGH EMCPLTMTPLDTSILRPNKTLRQSIEEWKDRNTMIKIASMKSKLVSEEEEEEEVLQCLEQLEDLCEQRDQHREWVILENYIPQFIQLLGAKNPDIRNRAL VILCILAKDSDYAKERVANVDNAIESIVRSLGRRIGERKLAVALLLELSKCNLVRDGIGKVQGCILLLVTMASSDDNQAAADAQELLENLSFSDPNIIQM AKANYFKHLLQRLSTGPEDVKTIMASTLAELELTDHNKASLFEGGALGPLLHLVSCGDIPMKKVAVKALQNLSSLPENGLQMIKEGAVQPLLGLLFQHIS SFSSLREQVATTIMHLAVSTVSQESSPTLVSLLESDDDIFKLFSLINLAGPDVQQNILLAFHALCQSPSASNIKAKLTECSAMQVLVQLCEHDDPNVRAN AVKLLYCLIEDDNEAIILEHVGQKCIETLLRIIQFSNVEEVITYAMGIISNLPEKHQITQWLLDAGALPVISKFLPDSKHSDPRKNHLVENATGAMRHFT ASTNPEWQKRAAEAGIIPVLVQLLDFGTTMMKKCAAISLARFSESSLALSRPIPKHKGFWCFSVPPETGCPIHEGICAVESSFCLVEADAVGPLVRVLQD PDPGTCEASLDALLTLIDGLKLQNGSKVLAEANAIPPIIGFLGSSSLRLQEKALNTLERIFRLPELKQKYGSSAQMPLVDLTQRGNSRMKSLSARILAHL NVLHEQSSYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G175800 [exp]	0	1
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.005G172200 [exp]	6.08	0.7436	MEKK1.1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	10.48	0.7432
AT2G45910			U-box domain-containing protei...		Potri.001G239100 [exp]	11.18	0.7352
AT3G59430			unknown protein		Potri.017G029800 [exp]	17.43	0.7254
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Potri.002G088900 [exp]	21.67	0.7117	Pt-MEKK1.2
AT3G18620			DHHC-type zinc finger family p...		Potri.007G070600 [exp]	22.64	0.6873
AT1G26810		GALT1	galactosyltransferase1 (.1)		Potri.010G168500 [exp]	28.98	0.6378
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.002G061300 [exp]	32.24	0.7382
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Potri.018G019250 [exp]	38.06	0.6920
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.008G031800 [exp]	43.40	0.7100	NAC047,NAC2.2

Compare expression of checked genes

Potri.002G175800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.