Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08510 607 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 394 / 6e-132 MEF21 mitochondrial editing factor 21 (.1) AT5G56310 391 / 6e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 394 / 1e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 389 / 4e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G33350 384 / 3e-128 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 387 / 8e-128 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 383 / 7e-127 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 381 / 4e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 381 / 6e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 419 / 9e-141 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 416 / 5e-139 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 407 / 4e-136 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G035900 [exp] 402 / 5e-135 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.007G050200 [exp] 396 / 1e-131 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G258766 [exp] 392 / 5e-131 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.008G106500 [exp] 387 / 2e-128 AT2G29760 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 390 / 5e-128 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G019400 [exp] 378 / 2e-126 AT1G09190 574 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005987 [exp] 698 / 0 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030225 [exp] 538 / 0 AT5G08510 472 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 417 / 5e-140 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 378 / 2e-126 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10020918 [exp] 378 / 1e-124 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 378 / 3e-124 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 377 / 4e-124 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 377 / 4e-124 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 375 / 3e-123 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029853 [exp] 369 / 6e-123 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G175900.1 pacid=42780151 polypeptide=Potri.002G175900.1.p locus=Potri.002G175900 ID=Potri.002G175900.1.v4.1 annot-version=v4.1 ATGAGCCAATTGAACAGAATTCATGCCCATACCCTTAAAAAAGGCATAGATTACTCGAAAACTCTCATAGTAGAGCTCCTCCGAATCCCTGACATCCCTT ATGCCCACAAAGTGTTCAATCAAAGTCCTTACCCCACCGTCTTTCTCTATAACAAACTCATCAAAGCCTACTCCTCTCAGAACCAGCCTCGCCAATGCCT CTCTCTCTACTCCCAAATGCTCCTCAAAGGCTGCCCGCCAAACGAACTCACTTTCACTTTCCTCTTCCCCGCTTGCGCTTCCTTTTATTCCCTTCTTCAT GGCAAAGTAATCCATACCCATTTCATAAAATCAGGTTTTGACTTTGATGTCTATGCCTTGACTGCTTTGGTTGACATGTACGCAAAATTGGGTGTTCTCA TGCTGGCACGCCAAGTGTTTGATGAAATGACTGTGAGAGATATACCCACTTGGAATTCATTAATTGCGGGTTATTCGAGGAGCGGGGATATGGAGGGTGC GTTGGAATTGTTTAAATTGATGCCTAGTAGGAGTGTGGTCTCTTGGACCACAATGATATCTGGGTATTCACAGAACGGAATGTACACCAAGGCATTGGAG ATGTTTTTGAAGATGGAGAAGGATAAAGAAGTTAGGCCTAATGAAGTGACCATTGCTAGTGTATTTTCAGCTTGTGCAAAACTTGGTGCATTGGAAGTTG GGGAGAGGATTGAAAGTTACGCAAGAGACAATGGGCTGATGAAAAATTTGTATGTAAGCAATACTTTGTTGGAAATGTATGCTAGGTGTGGTAAAATTGA TGCAGCGAGGCATGTGTTTAACGAGATTGGCAAGAGGAGGAATTTGTGTTCTTGGAATTCTATGATGATGGGCTTGGCTGTCCATGGAAGAAGCAATGAG GCCCTGCAGCTTTATGATCAAATGCTGGGAGAAGGAATTGAACCTGATGATGTCACATTTGTAGGACTTATTTTGGCGTGCACTCATGGAGGCCTGGTTG CAAAAGGCTGGCAACTTTTTCAGTCAATGGAGACAAACTTCAGTATTGTTCCCAAATTGGAACATTATGGCTGCATGGTTGATCTATTAGGGCGTGCAGG TGAACTGCAAGAAGCTTATGATCTCGTTAAAAGTATGCCAATGAAACCAGATTCTGTAATCTGGGGAACACTTCTGGGTGCCTGCAGTTTCCATAGTAAT GTTGAATTTGCCGAAATAGCTGCCGAATCTCTCTTTCAAGTTGAGCCGTGGAATCCGGGAAATTATGTAATTCTTTGCAATATATATGCATCAGCGCAAC GGTGGGATGGGGTTGCGAAGCTTAGAAAGCTTATGAAGGGTGGGCAGATCACGAAGGCAGCAGGATATAGTGTTATCGAAGGAGAAGGTGAAATTCACAA GTTCATTGTGGAAGATAAATCACATCCAAGACATTATGAAATATATGCATTACTGAATGAGATTTCGACAAAGATGAAGTTACAAATAACCGAGGATGAT TTTAAACCTGAACTTGAAGGGTTATTGTTAATGGAAGAGATGTGA
AA sequence Show only first row Show all	>Potri.002G175900.1 pacid=42780151 polypeptide=Potri.002G175900.1.p locus=Potri.002G175900 ID=Potri.002G175900.1.v4.1 annot-version=v4.1 MSQLNRIHAHTLKKGIDYSKTLIVELLRIPDIPYAHKVFNQSPYPTVFLYNKLIKAYSSQNQPRQCLSLYSQMLLKGCPPNELTFTFLFPACASFYSLLH GKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALE MFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNE ALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHSN VEFAEIAAESLFQVEPWNPGNYVILCNIYASAQRWDGVAKLRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKSHPRHYEIYALLNEISTKMKLQITEDD FKPELEGLLLMEEM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	0	1
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	3.16	0.9435
AT5G06400			Pentatricopeptide repeat (PPR)...		Potri.006G200800 [exp]	3.16	0.9380
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.003G031600 [exp]	6.24	0.9339
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	6.92	0.9322
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	8.36	0.9258
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	10.48	0.9300
AT4G02750			Tetratricopeptide repeat (TPR)...		Potri.018G085800 [exp]	10.95	0.9215
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032312 [exp]	12.32	0.9135
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	13.03	0.9146
AT1G48570			zinc finger (Ran-binding) fami...		Potri.015G038200 [exp]	13.41	0.9140

Compare expression of checked genes

Potri.002G175900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.