Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60170 592 / 0 EMB1220 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) AT1G70400 219 / 1e-69 unknown protein AT5G27120 112 / 2e-26 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G05060 111 / 6e-26 NOP56-like pre RNA processing ribonucleoprotein (.1) AT5G27140 102 / 2e-23 NOP56-like pre RNA processing ribonucleoprotein (.1) AT3G12860 98 / 1e-21 NOP56-like pre RNA processing ribonucleoprotein (.1) AT1G56110 98 / 1e-21 NOP56 homolog of nucleolar protein NOP56 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102800 [exp] 786 / 0 AT1G60170 610 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Potri.005G045600 [exp] 115 / 3e-27 AT5G27120 768 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.013G032300 [exp] 114 / 7e-27 AT3G05060 737 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.015G092900 [exp] 97 / 3e-21 AT3G12860 761 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Potri.012G095400 [exp] 96 / 7e-21 AT1G56110 761 / 0.0 homolog of nucleolar protein NOP56 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029168 [exp] 694 / 0 AT1G60170 707 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10012997 [exp] 691 / 0 AT1G60170 705 / 0.0 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10027881 [exp] 241 / 2e-76 AT1G60170 198 / 4e-60 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10002830 [exp] 174 / 1e-52 AT1G60170 135 / 7e-39 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10027882 [exp] 117 / 5e-31 AT1G60170 148 / 2e-43 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1) Lus10033846 [exp] 115 / 2e-27 AT5G27120 758 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10018995 [exp] 115 / 3e-27 AT5G27120 734 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10001716 [exp] 114 / 5e-27 AT5G27120 722 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10004143 [exp] 113 / 1e-26 AT5G27120 730 / 0.0 NOP56-like pre RNA processing ribonucleoprotein (.1) Lus10002831 [exp] 86 / 5e-20 AT1G60170 112 / 2e-30 embryo defective 1220, pre-mRNA processing ribonucleoprotein binding region-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01798 [poplar] [flax] Nop snoRNA binding domain, fibrillarin PF09785 [poplar] [flax] Prp31_C Prp31 C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G176000.2 pacid=42777370 polypeptide=Potri.002G176000.2.p locus=Potri.002G176000 ID=Potri.002G176000.2.v4.1 annot-version=v4.1 ATGGCAACACTAGCTGATTCTTTCCTTGCTGACCTTGATGAGTTATCCGACAACGATGCTGATATTGTCGATGAAGATGATGATGTAGAGGCAGGAAACA TGGAAGAGGATGTCGATGGAGACTTGGCAGACATTGAAGCTCTTAACTATGATGATTTGGACAGTGTGTCAAAATTGCAGAAAACACAACGATTTAATGA TATAATGCAGAAAGTGGAAGATGCACTTCAGAAGGGCTCAGATGTCCAAGATCATGGAATGGTATTGGAAGATGATCCTGAATATCAGCTAATAGTGAAC TGCAATGCATTGTCAGTTGACATTGAGAATGAAATTGTTATCATCCACAATTTTATTCGTGACAAGTACCGGCTGAAATTTCCGGAGCTTGAATCACTTG TCCATCACCCAATTGATTATGCTCGTGTTGTGAAGAAGATTGGAAATGAGATGGATTTGACCCTTGTTGATATGGAAGGGCTTATACCTGCCGCTATTAG AATGGTGATTTCTGTGACAGCATCCACAACAAGTGGCAAACCGCTTCCTGAAGAAGTCCTTCAAAAGACAATTGACGCTTGTAATCGAGCTCTTGCACTT GATTCAGCAAAGAAGAAGGTCCTTGATTTTGTAGAAACTAGAATGGGTTACATTGCACCGAATCTTTCTGCTATTGTTGGTAGTGCTGTTGCTGCAAAAC TTATGGGGATGGCTGGTGGTCTCACAGCCTTAGCCAAGATGCCTGCCTGCAATGTTCAGCTTCTTGGTGCCAAGAAGAAGAACCTTGCAGGATTTTCTAC TGCAACATCCCAATTCCGTGTTGGTTATATAGAGCAAACAGAGGTGTTTCAGTCCACACCACCTTCTTTGAGAATGCGTGCTGGTCGACTATTGGCTGCA AAATCAACACTTGCTGCACGAGTAGATTCTACTAGAGGAGATCCATCAGGAAACACTGGAAGAACCCTTAGGGAAGAGATTCACAAGAAAATAGAGAAGT GGCAAGAGCCTCCTCCTGCAAAGCAACCTAAACCACTTCCAGTTCCTGATTCTGAACCTAAGAAAAAGAGAGGTGGGCGGCGCCTAAGGAAGATGAAAGA AAGATATGCGATAACAGACATGAGGAAGCTGGCCAATAGGATGCAATTTGGGGTACCTGAAGAGAGTTCTTTGGGTGATGGGCTGGGGGAAGGTTATGGT ATGCTTGGTCAGGCTGGGAATGGCAAGCTGCGTGTATCAATTGGTCAGAGCAAACTCGCAGCGAAAGTTGCTAAGAAGTTCAAGGAGAAGAATTATGGAA GCAGTGGTGCTACTTCTGGCCTCACCTCAAGTCTGGCATTTACTCCTGTTCAGGGGATTGAGCTCACAAATCCACAAGCTCATGCGCACCAACTTGGCAG TGGGACACAAAGCACCTATTTTTCTGAGAATGGAACCTTTTCAAAGATCAAGAGGACCTGA
AA sequence Show only first row Show all	>Potri.002G176000.2 pacid=42777370 polypeptide=Potri.002G176000.2.p locus=Potri.002G176000 ID=Potri.002G176000.2.v4.1 annot-version=v4.1 MATLADSFLADLDELSDNDADIVDEDDDVEAGNMEEDVDGDLADIEALNYDDLDSVSKLQKTQRFNDIMQKVEDALQKGSDVQDHGMVLEDDPEYQLIVN CNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDMEGLIPAAIRMVISVTASTTSGKPLPEEVLQKTIDACNRALAL DSAKKKVLDFVETRMGYIAPNLSAIVGSAVAAKLMGMAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEVFQSTPPSLRMRAGRLLAA KSTLAARVDSTRGDPSGNTGRTLREEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYG MLGQAGNGKLRVSIGQSKLAAKVAKKFKEKNYGSSGATSGLTSSLAFTPVQGIELTNPQAHAHQLGSGTQSTYFSENGTFSKIKRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.002G176000 [exp]	0	1
AT5G22790		RER1	reticulata-related 1 (.1)		Potri.009G150400 [exp]	1.00	0.8608
AT1G71840			transducin family protein / WD...		Potri.019G087200 [exp]	1.41	0.8348
AT3G20240			Mitochondrial substrate carrie...		Potri.008G004100 [exp]	4.24	0.7644
AT2G35720		OWL1	ORIENTATION UNDER VERY LOW FLU...		Potri.003G076600 [exp]	5.29	0.7562
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Potri.001G336900 [exp]	6.85	0.7423
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.001G143200 [exp]	10.67	0.8029
AT3G55460		SCL30, At-SCL30	SC35-like splicing factor 30 (...		Potri.008G056600 [exp]	14.89	0.8149	Pt-SCL30.2
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G106700 [exp]	18.16	0.8057
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.008G032000 [exp]	22.84	0.7955	Pt-RAB1.9
AT4G13970			zinc ion binding (.1)		Potri.014G054600 [exp]	24.49	0.8100

Compare expression of checked genes

Potri.002G176000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.