Plant FIBer expression Database

Potri.002G176200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G22290 189 / 6e-57 Ubiquitin-specific protease family C19-related protein (.1)
AT1G16860 172 / 2e-50 Ubiquitin-specific protease family C19-related protein (.1)
AT1G78880 168 / 1e-48 Ubiquitin-specific protease family C19-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G022600
[exp]
185 / 2e-55 AT4G22290 451 / 4e-157 Ubiquitin-specific protease family C19-related protein (.1)
Potri.004G002000
[exp]
184 / 3e-55 AT4G22290 381 / 1e-129 Ubiquitin-specific protease family C19-related protein (.1)
Potri.010G252500
[exp]
172 / 5e-50 AT1G16860 646 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.010G252400
[exp]
172 / 6e-50 AT1G16860 647 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.008G006100
[exp]
171 / 1e-49 AT1G16860 714 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.008G006000
[exp]
171 / 2e-49 AT1G16860 652 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Potri.010G252000
[exp]
167 / 2e-48 AT1G16860 685 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005996
[exp]
249 / 9e-82 AT1G16860 202 / 2e-61 Ubiquitin-specific protease family C19-related protein (.1)
Lus10030215
[exp]
244 / 2e-78 AT1G78880 195 / 3e-57 Ubiquitin-specific protease family C19-related protein (.1)
Lus10033374
[exp]
165 / 2e-47 AT1G16860 702 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
Lus10034825
[exp]
164 / 2e-46 AT1G16860 677 / 0.0 Ubiquitin-specific protease family C19-related protein (.1)
PFAM info
Representative CDS sequence
>Potri.002G176200.2 pacid=42777284 polypeptide=Potri.002G176200.2.p locus=Potri.002G176200 ID=Potri.002G176200.2.v4.1 annot-version=v4.1
ATGAACGACCTGTCCAATGCAACTTTGAGAGAACATAACAGCCACAGCTGCAAGCCAATACCAAGACTAGCAGTCTGCATTTTACTACTTGTATTCTTTG
TTGGGCTTTCAGTTTCTGTTTTTATACTCGTTGTGGTCCATAATGTTTTCTTCTTTCTTTCTTTTATCTTGCTCTTTGCTTTAGTTCTTTCCTTTTTAGC
TTGGAATAAGCTTAATTGGAGACGTAAAGCTGCTGTCTTTTGGTGTCTTCGTTCTTTTCCTGATTCTGACCTTGCTGCTGCTACTGAAGGACAGCTTGTT
AAAATTACTGGGCTGGTATCCTGTGGAAGCGTTTCCCTGGAATCTTCATATGAGAGAGCTGCCAGATGTACCTACGTATCTACTCTTTTGTATGAATATG
GAGGTTTTGGAGTGAAGCCAATGAATGCTAATACATCATGCTTACAGTGGAATCTAAAATATTGCGAGAGGTTCTCCACAGACTTCTACATAACTGATCG
AAAGTCTGGTATCAGAGCCATGGTAAAAGCTGGTTCAGGTTGTAAAGTTGTTCCCTTGATTGTTGAGAGCAAACTTGTGACTACAAGGCAATGCAGAACC
CTATCTTCTCACTTGAGGAAATGGTTGCAAGAAAGAAACCTGTCAGCCGAGGCCCGCCTACTACGATTGGAAGAAGGGTACGTACAAGAAGGCAGCTTTG
TTACCGTGATTGGTGTTTTGCGTAGAAATAATGATATTTCGATGATTGTTCAGCCACAAGAGCTTTTCTCCACAGGATGCCTGTGGCAAAAGCTTTTACT
CCCTGTGGATGTTGATGGGCTAATCCTGGGGTTCCCAGATACTGCTGGCCCTAACATGAACCCAGGTTACACACAACACTCGGAACAATAA
AA sequence
>Potri.002G176200.2 pacid=42777284 polypeptide=Potri.002G176200.2.p locus=Potri.002G176200 ID=Potri.002G176200.2.v4.1 annot-version=v4.1
MNDLSNATLREHNSHSCKPIPRLAVCILLLVFFVGLSVSVFILVVVHNVFFFLSFILLFALVLSFLAWNKLNWRRKAAVFWCLRSFPDSDLAAATEGQLV
KITGLVSCGSVSLESSYERAARCTYVSTLLYEYGGFGVKPMNANTSCLQWNLKYCERFSTDFYITDRKSGIRAMVKAGSGCKVVPLIVESKLVTTRQCRT
LSSHLRKWLQERNLSAEARLLRLEEGYVQEGSFVTVIGVLRRNNDISMIVQPQELFSTGCLWQKLLLPVDVDGLILGFPDTAGPNMNPGYTQHSEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G22290 Ubiquitin-specific protease fa... Potri.002G176200
[exp]
0 1
AT5G41761 unknown protein Potri.002G167900
[exp]
2.44 0.8860
AT1G15460 ATBOR4 ARABIDOPSIS THALIANA REQUIRES ... Potri.001G174500
[exp]
4.24 0.8721
AT1G69800 Cystathionine beta-synthase (C... Potri.017G053600
[exp]
4.47 0.8760
AT4G20930 6-phosphogluconate dehydrogena... Potri.001G465600
[exp]
4.58 0.8778
AT3G22970 Protein of unknown function (D... Potri.010G080600
[exp]
5.91 0.8106
AT4G36600 Late embryogenesis abundant (L... Potri.007G024000
[exp]
6.32 0.8393
Potri.012G100900
[exp]
7.34 0.7899
AT4G16130 ATISA1, ARA1 arabinose kinase (.1) Potri.018G145700
[exp]
7.48 0.8614 Pt-ARA1.1
AT1G28270 RALFL4 ralf-like 4 (.1) Potri.004G045000
[exp]
7.74 0.8599
AT5G25930 Protein kinase family protein ... Potri.018G088074
[exp]
7.93 0.8386

Potri.002G176200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.