Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATHB.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46680 219 / 9e-72 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) AT3G61890 191 / 8e-61 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1) AT4G40060 111 / 2e-29 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 109 / 3e-28 HD ATHB6 homeobox protein 6 (.1) AT5G65310 108 / 3e-28 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT3G01470 102 / 4e-26 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT5G15150 100 / 6e-25 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT1G69780 100 / 8e-25 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT3G01220 97 / 7e-24 HD ATHB20 homeobox protein 20 (.1) AT1G26960 88 / 8e-21 HD ATHB23 homeobox protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103000 [exp] 402 / 3e-144 AT2G46680 237 / 1e-78 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.012G023700 [exp] 145 / 1e-42 AT2G46680 147 / 4e-43 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.001G083700 [exp] 134 / 6e-39 AT2G46680 132 / 3e-38 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Potri.007G097100 [exp] 117 / 4e-31 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.005G071900 [exp] 116 / 7e-31 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.015G065400 [exp] 111 / 5e-29 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 108 / 5e-28 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.002G100600 [exp] 105 / 3e-27 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G161500 [exp] 102 / 6e-26 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030214 [exp] 239 / 3e-79 AT2G46680 208 / 5e-67 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10005997 [exp] 195 / 7e-62 AT2G46680 162 / 7e-49 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10008840 [exp] 150 / 5e-45 AT2G46680 140 / 5e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10032952 [exp] 147 / 1e-43 AT2G46680 142 / 1e-41 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2) Lus10023159 [exp] 114 / 4e-30 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10030800 [exp] 105 / 3e-27 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 103 / 3e-26 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 102 / 6e-26 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 102 / 6e-26 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037200 [exp] 101 / 2e-25 AT1G69780 319 / 2e-109 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.002G176300.1 pacid=42779413 polypeptide=Potri.002G176300.1.p locus=Potri.002G176300 ID=Potri.002G176300.1.v4.1 annot-version=v4.1 ATGTTTGATGGAGGAGAGTATTCACCTTCGGCGACAGAGCCTTTTAGCTGCATGAACGGTGTCACAACCTCCAGAAAGAAGAAGAACAAGAACAAAAGGA GGTTTAGTGATGAGCAGATTAAATCGCTGGAGTCTATGTTTGAATCAGAAACAAGGCTTGAGCCTCGAAAGAAGATGCAGCTGGCAAAAGAGCTTGGATT GCAACCACGACAGGTTGCAATATGGTTTCAGAATAAGAGAGCTAGATGGAAGTCTAAGCAGCTTGAAAGAGACTTCAGCATACTACGAGCCAATTACAAT AGCTTGGCTTCCAGGTTTGAGACTCTGAAGAAAGAGAAGCAAGCTTTGGTAATACAGTTACAGAAGATTAATGATTTGATGAAGAAGCCAGGAGAGGAAG GAGAGTGTTGTGGCCAAGGACCAGCTGTGAACAGTATCGAAGGCAAATCAGAGAATGCAGACACAACTATGGGTGAATCAGAAACGAATCCTAGATTGTC AATTGAAAGACCAGAACATGGATTAGGAGTCCTCTCAGATGAAGATAGCAGCATAAAAGCAGAGTATTTTGAACTCGAAGAAGAACCGAACCTAATTAGT ATGGTGGAACCCGCTGATGGATCATTGACATCACAAGAAGATTGGGGGAGTTTAGACTCTGATCGCCTCTTCGATCAATCAAGCAGTGACTATCAGTGGT GGGATTTCTGGGCTTGA
AA sequence Show only first row Show all	>Potri.002G176300.1 pacid=42779413 polypeptide=Potri.002G176300.1.p locus=Potri.002G176300 ID=Potri.002G176300.1.v4.1 annot-version=v4.1 MFDGGEYSPSATEPFSCMNGVTTSRKKKNKNKRRFSDEQIKSLESMFESETRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDFSILRANYN SLASRFETLKKEKQALVIQLQKINDLMKKPGEEGECCGQGPAVNSIEGKSENADTTMGESETNPRLSIERPEHGLGVLSDEDSSIKAEYFELEEEPNLIS MVEPADGSLTSQEDWGSLDSDRLFDQSSSDYQWWDFWA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.002G176300 [exp]	0	1	Pt-ATHB.4
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Potri.006G063700 [exp]	1.00	0.8511
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Potri.008G106700 [exp]	1.41	0.8486
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.009G048700 [exp]	2.00	0.8400	Pt-SCL3.1
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.014G019500 [exp]	2.23	0.8127
AT5G49120			Protein of unknown function (D...		Potri.010G011700 [exp]	3.00	0.8438
AT5G23370			GRAM domain-containing protein...		Potri.004G068100 [exp]	4.24	0.8114
AT3G15095		HCF243	high chlorophyll fluorescence ...		Potri.011G097700 [exp]	5.29	0.7764
AT4G12070			unknown protein		Potri.001G017000 [exp]	5.65	0.7586
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.003G185050 [exp]	6.00	0.7805
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.008G065600 [exp]	7.34	0.7483	MDPIP1.3

Compare expression of checked genes

Potri.002G176300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.