Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CRK3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46700 835 / 0 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 719 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 684 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G50530 665 / 0 CRK CDPK-related kinase (.1.2) AT3G19100 647 / 0 Protein kinase superfamily protein (.1) AT2G41140 645 / 0 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 643 / 0 Protein kinase superfamily protein (.1) AT1G49580 642 / 0 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 437 / 3e-147 CPK16 calcium-dependent protein kinase 16 (.1) AT4G36070 413 / 4e-138 CPK18 calcium-dependent protein kinase 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103500 [exp] 987 / 0 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 757 / 0 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.007G040800 [exp] 679 / 0 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.005G135900 [exp] 669 / 0 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 646 / 0 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.004G143700 [exp] 645 / 0 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.006G040500 [exp] 617 / 0 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.009G105700 [exp] 609 / 0 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.007G057600 [exp] 412 / 1e-137 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008875 [exp] 734 / 0 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10023234 [exp] 687 / 0 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10002966 [exp] 681 / 0 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10025270 [exp] 644 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10009342 [exp] 498 / 8e-172 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10041914 [exp] 418 / 1e-139 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 414 / 2e-139 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10009078 [exp] 343 / 2e-111 AT2G46700 451 / 2e-153 CDPK-related kinase 3 (.1.2) Lus10000889 [exp] 328 / 2e-105 AT5G12180 907 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10038460 [exp] 328 / 3e-105 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.002G176700.1 pacid=42780192 polypeptide=Potri.002G176700.1.p locus=Potri.002G176700 ID=Potri.002G176700.1.v4.1 annot-version=v4.1 ATGGGGCAGTGTTACGGCAAAACTAATTCAACTAACATAAATGACGCAACAACCGTCACAATCGTGGCTTCCTCCACCGATCAAAACCAGCAAACGCCGT TACCTTCCTCCACCCCGCGTAACGGCGTGCGCTCGTTGAAGTACTCGGCCAGTTCCTCCTCCACGCACCCGAGCCCCTGGCCGAGCCCGTATCCACAGGG TGTCGCCGCCAGCCCGCTTCAAGGAGTGTCGCCGTCTCCGGCGAGGTCGTCTACGCCCAGGAGATTTTTTAAGAGGCCGTTTCCCCCGCCGTCGCCGGCA AGGCATATAGCGGCGTCGTTGGTGAAGAGGCTTGGTGGTAGAGGGAAGCCGAAGGAGGGACCAATCCCGGAGCACGGCAGTGTGGAGGCGGAGCAGCAGC AAGAGCAGTCGCTTGATAAGAGTTTTGGATATAGCAAGAATTTTGGAGCTAAGTATGAGTTAGGGAAGGAAATAGGAAGAGGGCATTTTGGTCATACTTG CTCTGCTAGAGTTAAGAAAGGTGAACTTAAAGATGAAGCTGTTGCTGTCAAGATTATATCAAAAGCAAAGATGACTTCCACTATATCAATTGAAGATGTT CGTAGGGAGGTAAAAATACTGAAAGCTCTATCGGGACATAGGCATCTGGTCAAATTTTATGATGCATTTGAGGATGCCAATAACGTGTACATAGTGATGG AATTGTGTGAGGGAGGGGAGCTTTTAGACAGAATTTTGGCAAGAGGAGGAAGATACACAGAGGAAGATGCAAAAGCTATAATTGTGCAAATCTTGTGTGT GGTAGCATTTTGTCATCTTCAAGGCGTTGTACACCGTGACCTAAAACCAGAGAATTTCCTTTTCACTTCTGGGAGTGAAGATGCTGACATGAAGCTTATT GATTTTGGTCTTTCTGACTTTTTTAGGCCAGATGAAAGATTAAATGATATTGTTGGAAGTGCATATTATGTTGCTCCTGAAGTCCTGCATAGATCTTACA GTCTTGAAGCAGATATATGGAGCATTGGCATTATTACCTATATCTTGTTATGTGGAAGCAGGCCTTTCTGGGCACGGACTGAATCAGGGATTTTTCGTGC AGTGCTGAGATCTGATCCCAACTTTGAAGATCTACCCTGGCCTTCTGTCACTCCAGAGGCCAAGGATTTTGTGAAGAGACTTCTGAACAAGGACTACAGG AAAAGAATGACTGCTGTCCAAGCTCTAACTCACCCATGGTTGAGGGATGATAGTCGTCCTATACATGTAGACATATTGATCTACAAGCTAGTCAAGGTGT ACTTACATGCTACACCTTTTAAACGTGCAGCACTAAAGGCTCTCTCAAAAGCTTTGACTGAGGATGAGCTTTTCTATCTTAGAGCTCAATTCAATCTGCT AGGGCCAAATGGTGATGGAAGTGTTTCACTGGACAATTTCAGAATGGCTTTAGTACATAATGCAACTGATGCCATGAGAGAGTCGAGGGTTCCTGAAATT CTCAATGCGATGGAATCCCTTTCTTATAGGAAGATGTACTTCGAAGAGTTTTGTGCTGCTGCGATCAGCACATATCAATTAGAGGCTCTTGAGGGGTGGG AGCAGATTGCCTCCACTGCATTTGAGCATTTTGAACAGGAGGGTAACCGAGTCATCTCTGTTGAAGAATTGGCGCGGGAACTAAATGTAGGCCCTTCTGC CTATACAATCATCAAAGACTGGATCAGAAGCTCAGATGGCAAGCTTAGTGTACTTGGATATGCAAAATTTTTACATGGTGTGACACTGCGTAGCACAAAT ACGAGACACCGTTAG
AA sequence Show only first row Show all	>Potri.002G176700.1 pacid=42780192 polypeptide=Potri.002G176700.1.p locus=Potri.002G176700 ID=Potri.002G176700.1.v4.1 annot-version=v4.1 MGQCYGKTNSTNINDATTVTIVASSTDQNQQTPLPSSTPRNGVRSLKYSASSSSTHPSPWPSPYPQGVAASPLQGVSPSPARSSTPRRFFKRPFPPPSPA RHIAASLVKRLGGRGKPKEGPIPEHGSVEAEQQQEQSLDKSFGYSKNFGAKYELGKEIGRGHFGHTCSARVKKGELKDEAVAVKIISKAKMTSTISIEDV RREVKILKALSGHRHLVKFYDAFEDANNVYIVMELCEGGELLDRILARGGRYTEEDAKAIIVQILCVVAFCHLQGVVHRDLKPENFLFTSGSEDADMKLI DFGLSDFFRPDERLNDIVGSAYYVAPEVLHRSYSLEADIWSIGIITYILLCGSRPFWARTESGIFRAVLRSDPNFEDLPWPSVTPEAKDFVKRLLNKDYR KRMTAVQALTHPWLRDDSRPIHVDILIYKLVKVYLHATPFKRAALKALSKALTEDELFYLRAQFNLLGPNGDGSVSLDNFRMALVHNATDAMRESRVPEI LNAMESLSYRKMYFEEFCAAAISTYQLEALEGWEQIASTAFEHFEQEGNRVISVEELARELNVGPSAYTIIKDWIRSSDGKLSVLGYAKFLHGVTLRSTN TRHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Potri.002G176700 [exp]	0	1	CRK3
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	6.32	0.8494
AT1G68670	GARP		myb-like transcription factor ...		Potri.008G117500 [exp]	10.81	0.7076
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.008G197000 [exp]	24.08	0.7951	Pt-SPL7.2
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	30.49	0.7935
AT3G23200			Uncharacterised protein family...		Potri.008G165500 [exp]	32.72	0.7776
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	37.94	0.7851
AT3G26380			Melibiase family protein (.1)		Potri.008G185300 [exp]	38.49	0.7545
AT5G50720		ATHVA22E	ARABIDOPSIS THALIANA HVA22 HOM...		Potri.012G101600 [exp]	44.63	0.6922
AT3G12020			P-loop containing nucleoside t...		Potri.006G194900 [exp]	51.17	0.7497
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	54.33	0.7723

Compare expression of checked genes

Potri.002G176700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.