Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17880 277 / 1e-86 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G00870 267 / 1e-84 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46830 234 / 6e-71 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT1G32640 179 / 1e-49 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 164 / 2e-44 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G16430 158 / 7e-43 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 115 / 2e-27 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G00480 114 / 5e-27 bHLH ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G01260 111 / 7e-26 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G09820 100 / 2e-22 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103700 [exp] 779 / 0 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 440 / 2e-151 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 414 / 4e-141 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G092200 [exp] 166 / 2e-44 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G142200 [exp] 158 / 9e-42 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G099700 [exp] 125 / 1e-30 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G172101 [exp] 124 / 3e-30 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G208600 [exp] 119 / 1e-28 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 118 / 4e-28 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005999 [exp] 451 / 1e-155 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030212 [exp] 232 / 3e-72 AT4G00870 135 / 2e-36 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000037 [exp] 166 / 2e-48 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 170 / 4e-46 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 160 / 1e-43 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 162 / 2e-43 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 159 / 4e-42 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035366 [exp] 134 / 2e-34 AT1G32640 376 / 9e-125 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 119 / 2e-28 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 113 / 2e-26 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain CL0161 [poplar] [flax] GAF PF14215 [poplar] [flax] bHLH-MYC_N bHLH-MYC and R2R3-MYB transcription factors N-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G176900.1 pacid=42777252 polypeptide=Potri.002G176900.1.p locus=Potri.002G176900 ID=Potri.002G176900.1.v4.1 annot-version=v4.1 ATGGAGGAACTCATTATTTCTCCATCTTCATCATCTTCACCGGTCTCCTTATCCCAAGAAACCCCACCGACTCTCCAACAAAGGCTTCAATTCATAGTCC AAAACCAACCAGATTGGTGGTCTTATGCCATATTTTGGCAAACATCAAACGATGACAGCGGCCGAATCTTCCTAGGCTGGGGTGATGGCCATTTTCAAGG CTCTAAAGATACTTCTCCCAAACCAAACACCTTCAGCAATAGCCGCATGACGATATCAAACTCCGAGAGGAAAAGGGTCATGATGAAGGGAATCCAATCC CTGATCGGTGAATGTCACGATCTTGATATGTCTCTGATGGATGGTAACGATGCTACCGACTCTGAGTGGTTCTATGTCATGTCCCTTACTCGATCTTTCT CACCTGGAGATGGCATCCTTGGCAAAGCTTATACAACTGGTTCTTTGATTTGGTTAACTGGTGGCCATGAACTTCAATTCTACAACTGTGAAAGAGTCAA AGAAGCACAAATGCATGGCATTGAGACCCTGGTTTGCATACCTACATCGTGTGGGGTTCTTGAATTAGGATCCTCTTCTGTGATCAGAGAAAATTGGGGT CTTGTTCAACAAGCCAAGTCTCTTTTTGGGTCAGATCTTAGCGCTTATTTGGTGCCCAAAGGCCCTAATAACTCCAGTGAAGAACCGACCCAGTTTCTTG ACAGGAGCATTTCTTTTGCGGATATGGGCATAATAGCTGGACTTCAAGAAGATTGTGCAGTTGATCGTGAACAGAAGAACGCTCGTGAAACAGAAGAAGC AAATAAACGTAACGCTAATAAACCAGGCCTGTCTTATTTGAACTCAGAGCATTCAGACTCGGACTTTCCTCTACTTGCTATGCATATGGAGAAAAGAATT CCAAAGAAAAGAGGGAGAAAGCCTGGCCTGGGCAGAGACGCCCCACTGAACCATGTAGAGGCTGAGAGGCAGCGGAGAGAGAAGTTGAACCACCGGTTTT ACGCGCTGCGTGCGGTGGTCCCAAACGTGTCTAGAATGGACAAAGCATCACTATTATCTGATGCTGTATCCTACATCAATGAATTGAAGGCGAAGGTTGA TGAATTAGAGTCACAACTAGAAAGGGAATCCAAGAAAGTGAAATTGGAAGTTGCCGATAATTTGGACAATCAAAGCACCACCACTTCTGTGGACCAATCA GCCTGCAGGCCGAATAGTGCTGGTGGCGCTGGGCTTGCACTTGAAGTTGAGATCAAGTTTGTGGGTAATGATGCAATGATTAGAGTCCAATCGGAGAATG TGAACTATCCAGCTTCCAGGTTAATGTGTGCGCTCCGTGAACTGGAGTTTCAGGTTCACCATGCTAGTATGTCCTGTGTTAACGAGCTTATGCTCCAAGA TGTGGTAGTTAGGGTTCCTGATGGACTGAGAACCGAAGAGGCCTTGAAATCTGCTCTTCTTGGAAGACTAGAATAA
AA sequence Show only first row Show all	>Potri.002G176900.1 pacid=42777252 polypeptide=Potri.002G176900.1.p locus=Potri.002G176900 ID=Potri.002G176900.1.v4.1 annot-version=v4.1 MEELIISPSSSSSPVSLSQETPPTLQQRLQFIVQNQPDWWSYAIFWQTSNDDSGRIFLGWGDGHFQGSKDTSPKPNTFSNSRMTISNSERKRVMMKGIQS LIGECHDLDMSLMDGNDATDSEWFYVMSLTRSFSPGDGILGKAYTTGSLIWLTGGHELQFYNCERVKEAQMHGIETLVCIPTSCGVLELGSSSVIRENWG LVQQAKSLFGSDLSAYLVPKGPNNSSEEPTQFLDRSISFADMGIIAGLQEDCAVDREQKNARETEEANKRNANKPGLSYLNSEHSDSDFPLLAMHMEKRI PKKRGRKPGLGRDAPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYINELKAKVDELESQLERESKKVKLEVADNLDNQSTTTSVDQS ACRPNSAGGAGLALEVEIKFVGNDAMIRVQSENVNYPASRLMCALRELEFQVHHASMSCVNELMLQDVVVRVPDGLRTEEALKSALLGRLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Potri.002G176900 [exp]	0	1
					Potri.001G371850 [exp]	1.41	0.9381
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.006G272700 [exp]	4.24	0.8804
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.006G171700 [exp]	4.89	0.8989
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	5.09	0.9153
AT4G38460		GGR	geranylgeranyl reductase (.1)		Potri.015G043400 [exp]	5.29	0.8873
AT5G65280		GCL1	GCR2-like 1 (.1)		Potri.007G096500 [exp]	6.00	0.9045
AT5G67050			alpha/beta-Hydrolases superfam...		Potri.007G044500 [exp]	7.74	0.8845
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.016G137600 [exp]	10.72	0.9024	CYP71AN3
AT5G49620	MYB	ATMYB78	myb domain protein 78 (.1.2)		Potri.014G117000 [exp]	10.95	0.8994	Pt-MYB.47
AT5G47710			Calcium-dependent lipid-bindin...		Potri.016G005300 [exp]	14.00	0.8994

Compare expression of checked genes

Potri.002G176900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.