Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12915 114 / 4e-30 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT1G56070 119 / 6e-10 LOS1, AT1G56075.1 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) AT1G06220 45 / 6e-06 GFA1, CLO, MEE5 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) AT5G25230 39 / 0.0007 Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098100 [exp] 128 / 3e-13 AT1G56070 1648 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065600 [exp] 123 / 3e-12 AT1G56070 1620 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.007G065700 [exp] 123 / 1e-11 AT1G56070 1623 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Potri.018G114900 [exp] 45 / 3e-06 AT1G06220 1710 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Potri.006G190600 [exp] 45 / 3e-06 AT1G06220 1744 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031779 [exp] 124 / 1e-11 AT3G12915 760 / 0.0 Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031186 [exp] 124 / 6e-11 AT1G56070 902 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031764 [exp] 52 / 2e-09 AT1G56070 158 / 8e-46 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031129 [exp] 46 / 3e-06 AT1G06220 1751 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10043478 [exp] 45 / 3e-06 AT1G06220 729 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10034111 [exp] 45 / 5e-06 AT1G06220 1761 / 0.0 MATERNAL EFFECT EMBRYO ARREST 5, GAMETOPHYTE FACTOR 1, CLOTHO, Ribosomal protein S5/Elongation factor G/III/V family protein (.1.2) Lus10031763 [exp] 0 / 1 AT1G56070 1418 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1) Lus10031201 [exp] 0 / 1 AT1G56070 1415 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1, Ribosomal protein S5/Elongation factor G/III/V family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF03764 [poplar] [flax] EFG_IV Elongation factor G, domain IV
Representative CDS sequence Show only first row Show all	>Potri.002G176966.1 pacid=42779132 polypeptide=Potri.002G176966.1.p locus=Potri.002G176966 ID=Potri.002G176966.1.v4.1 annot-version=v4.1 ATGGAGGCAGGGCCCACGGAAGAAGGCCTTGCTGAGGCTATTGACGTGGGCCATATTGGTCCAAGAGACGATCCTAAGAATCGCGCCAAGATCTTGTCGG AGGAGTTTGGTTGGGACAAGCATCTTGCGAAGAAAATCTGGTGTGTTGGTCCTGAGACTACGGGACCCAACGTGGTTGTGGATATGTGTAAGGGAGTTCT GTTGTTGCTGGGTTCCAATGGGCTTCAAAGGAAGGTGCCTAGGCTGAAGAAAACAAGAGAGGTATCTGCTTTGAAGTCTGTGATGTGGTTCTCCCTGCTG ATGCCATTCACACAACCTTTGGAGGCTGGCACACAAGCAGCTCAGCTTGTTACTGATATCACGAACCGAAAGGGTTTGAAGGAGCAGATGACACCTCTAT CTGAGTTTGAGAACAAGCTATAA
AA sequence Show only first row Show all	>Potri.002G176966.1 pacid=42779132 polypeptide=Potri.002G176966.1.p locus=Potri.002G176966 ID=Potri.002G176966.1.v4.1 annot-version=v4.1 MEAGPTEEGLAEAIDVGHIGPRDDPKNRAKILSEEFGWDKHLAKKIWCVGPETTGPNVVVDMCKGVLLLLGSNGLQRKVPRLKKTREVSALKSVMWFSLL MPFTQPLEAGTQAAQLVTDITNRKGLKEQMTPLSEFENKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.002G176966 [exp]	0	1
AT1G09390			GDSL-like Lipase/Acylhydrolase...		Potri.005G006500 [exp]	4.89	0.8916
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.013G085101 [exp]	8.77	0.8822
AT5G06270			unknown protein		Potri.016G073400 [exp]	12.32	0.8410
AT2G28790			Pathogenesis-related thaumatin...		Potri.001G237600 [exp]	13.26	0.9170
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010500 [exp]	19.23	0.9137
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.009G109700 [exp]	21.16	0.8905	Pt-AOS.5,CYP74C8
AT4G14930			Survival protein SurE-like pho...		Potri.010G088100 [exp]	24.49	0.9071
AT1G11820			O-Glycosyl hydrolases family 1...		Potri.004G010500 [exp]	28.42	0.8044
AT4G00680		ADF8	actin depolymerizing factor 8 ...		Potri.003G125500 [exp]	29.13	0.7407	ADF.8,ADF3
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.005G028200 [exp]	33.16	0.9026

Compare expression of checked genes

Potri.002G176966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.