Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65960 389 / 7e-134 GTP binding (.1) AT3G11730 47 / 5e-06 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT3G53610 41 / 0.0008 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT5G59840 40 / 0.001 Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G064500 [exp] 517 / 0 AT5G65960 271 / 2e-88 GTP binding (.1) Potri.016G097800 [exp] 47 / 5e-06 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.003G004000 [exp] 46 / 1e-05 AT3G11730 359 / 2e-128 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.004G226600 [exp] 45 / 3e-05 AT3G11730 364 / 4e-130 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Potri.001G152800 [exp] 41 / 0.0005 AT1G02130 382 / 2e-137 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G236100 [exp] 41 / 0.0008 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1) Potri.010G208900 [exp] 41 / 0.0008 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3) Potri.008G051700 [exp] 41 / 0.0009 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3) Potri.003G081800 [exp] 40 / 0.0009 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035977 [exp] 369 / 7e-125 AT5G65960 372 / 1e-126 GTP binding (.1) Lus10016687 [exp] 367 / 2e-124 AT5G65960 378 / 1e-128 GTP binding (.1) Lus10036442 [exp] 50 / 9e-07 AT3G11730 350 / 2e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) Lus10016284 [exp] 42 / 0.0006 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10010999 [exp] 41 / 0.0006 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10000595 [exp] 41 / 0.0006 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) Lus10012032 [exp] 41 / 0.0008 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10199 [poplar] [flax] Adaptin_binding Alpha and gamma adaptin binding protein p34
Representative CDS sequence Show only first row Show all	>Potri.002G177100.3 pacid=42777517 polypeptide=Potri.002G177100.3.p locus=Potri.002G177100 ID=Potri.002G177100.3.v4.1 annot-version=v4.1 ATGAGTGAAGAAACTAAATCATCAGATTTTACATCACTTGAGACCCGACCAGGCATCTTGTTTATCGGATCCTCTAACGTTGGCAAACGCACTCTCCTCT CAAGGTTGCTGTCAATTGATTTGGAAGACGCATTTGACTCATCAAACCAAGTTTTCTCACATGGATGGAGTATTGATACAAAGTATTACACAGCTGATGT TTCTCTATGGATAGCTCATCTTCATGAAGGATTTTCAATTGGATCACTTCCAATTTACAACAAGCTTGCTGCTTTGGTTATGGTTTTTGACCTGAGTGAT TTGTCATCTTTTGTTGCACTTAAGGATTGGGTAGCTGGAAATGATATTAGCAAGTTTGAGATATTGTTGTGTATTGGAAACAAAGTTGATCGGATTCCAG GTCATCCTGTTCATGCTGAATATAGAAGACAGCTAAGGAAAATTGGAGAGTCAGGATCTTTTGATGATCTGAATATAGAGCTTGATGAGTTTGGAATTTC TGAGATTGAAGGAAGTAGTTTGTTGGGTGATGAAGAAGAGCCATCACGGGAGATCAAGAGGTCATGTATTGAATGGTGCACTGATCATGGAATTGAATAC ATTGAAGCTTGTGCTTCCAATGTTGATTTTGACAAATGTTTATTGGTTGATGGGGACTCACAAGGAGTAGAACGTCTATATGGTGCTCTTTCTGCTCATA TGTGGCCAGGAATGATCCTGAAATCTGACAATAAGATAATCCAACCAACATTACCTGATAAAGAAGAAATCTCAGAAGATGAATCTGATTATGAATTAGA GTATGAAGTGCTATCTGGTGGCTCAGCTGAACCATGGGATGACACATATGGAGGATGGGTTTCTGCAAATGGTAGAAGTGCCATTCCAGATGAAGGGGGA TCAGTTACTGAAAATAATTATGTCAAAGAATGTGAGAATGAAAATAGAGAAAAGTTTGATAAAGAGATGCAGCCCTCATCATCGGCAACAGAATTGCAAG GTGATAAGAGAGCGGTGCCTGATGTACAAGAACCTTGTGAAAATGGAGAGTCGGATGAAGTTACGCCATTTGACTTTGAGGATTTGGAGCAGTTGATGTC TGAGATAGGGAATGTGCGTGATAACTTAAGGTTGATGCCTGATTTTCAAAGGAGGGAAATGGCTGCGAATCTGGCCATGAAAATGGCTGCCATGTTTGGA GGTGGCAGTGATGTTGATGATGAGGAAGTTGAGTGA
AA sequence Show only first row Show all	>Potri.002G177100.3 pacid=42777517 polypeptide=Potri.002G177100.3.p locus=Potri.002G177100 ID=Potri.002G177100.3.v4.1 annot-version=v4.1 MSEETKSSDFTSLETRPGILFIGSSNVGKRTLLSRLLSIDLEDAFDSSNQVFSHGWSIDTKYYTADVSLWIAHLHEGFSIGSLPIYNKLAALVMVFDLSD LSSFVALKDWVAGNDISKFEILLCIGNKVDRIPGHPVHAEYRRQLRKIGESGSFDDLNIELDEFGISEIEGSSLLGDEEEPSREIKRSCIEWCTDHGIEY IEACASNVDFDKCLLVDGDSQGVERLYGALSAHMWPGMILKSDNKIIQPTLPDKEEISEDESDYELEYEVLSGGSAEPWDDTYGGWVSANGRSAIPDEGG SVTENNYVKECENENREKFDKEMQPSSSATELQGDKRAVPDVQEPCENGESDEVTPFDFEDLEQLMSEIGNVRDNLRLMPDFQRREMAANLAMKMAAMFG GGSDVDDEEVE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	0	1
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	2.00	0.9494
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	2.82	0.9273
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	4.69	0.9303
AT4G36440			unknown protein		Potri.007G019400 [exp]	5.09	0.9073
AT4G14600			Target SNARE coiled-coil domai...		Potri.002G102400 [exp]	5.47	0.9230
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	5.74	0.9287
AT1G22970			unknown protein		Potri.010G117100 [exp]	9.48	0.9178
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.013G123000 [exp]	9.79	0.9212
AT1G17280		UBC34	ubiquitin-conjugating enzyme 3...		Potri.003G073100 [exp]	10.58	0.9225
AT1G64870			unknown protein		Potri.006G252800 [exp]	10.58	0.9136

Compare expression of checked genes

Potri.002G177100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.