Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01180 382 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G103800 [exp] 476 / 2e-171 AT1G01180 373 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010109 [exp] 397 / 1e-139 AT1G01180 397 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10030709 [exp] 332 / 6e-114 AT1G01180 350 / 3e-121 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013195 [exp] 330 / 3e-113 AT1G01180 353 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012612 [exp] 196 / 2e-63 AT1G01180 181 / 3e-58 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13578 [poplar] [flax] Methyltransf_24 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.002G177500.1 pacid=42778981 polypeptide=Potri.002G177500.1.p locus=Potri.002G177500 ID=Potri.002G177500.1.v4.1 annot-version=v4.1 ATGAAGGAAGAGCAGTTACCATCTTTCAACCATCGCCACACCGACAATAACAAGAAGACAAGATTGGTATTCAGATTATTGAATTCTCCAGCCGTTTACG TTATCCTCTTACTGCTATCCTACGCACTAGGTTACTTATCAGCTCCAAGCTCCCGCTCTCCACCGCAGCCTTTACCATCTCCAGAAATCTTGAAGGTGGG TGATAACCTCAACACCCAACTCGACAACTTCCGAGTCAAGACTCACTGTGCCAAACCCCTTCCACCCCAGCTCGTCCATCAAACAATTCTTGACCGGGTT TTCAACTCCACGTCACCATATGACAATTTTCCTCCCGCGTACGTTAGCGGCCTCCTTAGAGAGAAAAAGTTCAAGGGATGGGGCTCCTACGGTGAAGTTT TTGAACACCTTATCCAAAAAGTGAAGCCTAAAGTGATCATCGAAGTGGGTACTTTCTTGGGCGCATCGGCTCTCCACATGGCCGAGTTGACTCGCAAACT CGGGCTGGACTCACAGATTCTTTGCATAGACGATTTTCGCGGGTGGCCCGGGTTTCGTGACCGGTTTGGTTATGTTAATATGATAAACAGCGACGTTTTG TTGCTGTACCAGTTCATGCAGAACGTTATTCACAAAAATGCTACTGGGTCGGTTTTGCCAATGCCATTTTCGAGCGGGTCGGCCTTGGAGAAATTATGTG AGTGGGGTGTGTTTGGTGATTTGATAGAAATCGATGCGGGCCATGATTTTAACTCGGCGTGGGCTGATATAAACCGGGCGTACCGGATCTTGAGACCCGG TGGGATAATTTTTGGGCACGATTATTTTACCGCAGCGGACAATAGAGGTGTGAGGAGAGCAGTAAATTTATTTGCTCAGATGAATGGGCTTAAAATCCAC ACCGATGGGCAACATTGGGTCATTGACTCCCCCTGA
AA sequence Show only first row Show all	>Potri.002G177500.1 pacid=42778981 polypeptide=Potri.002G177500.1.p locus=Potri.002G177500 ID=Potri.002G177500.1.v4.1 annot-version=v4.1 MKEEQLPSFNHRHTDNNKKTRLVFRLLNSPAVYVILLLLSYALGYLSAPSSRSPPQPLPSPEILKVGDNLNTQLDNFRVKTHCAKPLPPQLVHQTILDRV FNSTSPYDNFPPAYVSGLLREKKFKGWGSYGEVFEHLIQKVKPKVIIEVGTFLGASALHMAELTRKLGLDSQILCIDDFRGWPGFRDRFGYVNMINSDVL LLYQFMQNVIHKNATGSVLPMPFSSGSALEKLCEWGVFGDLIEIDAGHDFNSAWADINRAYRILRPGGIIFGHDYFTAADNRGVRRAVNLFAQMNGLKIH TDGQHWVIDSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01180			S-adenosyl-L-methionine-depend...		Potri.002G177500 [exp]	0	1
AT5G41761			unknown protein		Potri.006G017700 [exp]	8.36	0.8732
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	8.94	0.8726
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211800 [exp]	18.54	0.8005
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	19.79	0.8313
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003700 [exp]	21.77	0.8655
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003500 [exp]	21.90	0.8589
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.008G089000 [exp]	24.49	0.8363
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270700 [exp]	25.98	0.8466
AT5G46080			Protein kinase superfamily pro...		Potri.011G058300 [exp]	26.36	0.8666
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Potri.002G009700 [exp]	26.73	0.7756

Compare expression of checked genes

Potri.002G177500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.