Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01140 711 / 0 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 645 / 0 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G26980 625 / 0 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 615 / 0 Ca2+regulated serine-threonine protein kinase family protein (.1) AT4G24400 513 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G35410 508 / 4e-179 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT5G45820 451 / 7e-157 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G18700 434 / 1e-149 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT4G30960 432 / 1e-149 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G10930 431 / 4e-149 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104200 [exp] 840 / 0 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G062800 [exp] 652 / 0 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.001G222600 [exp] 650 / 0 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G119200 [exp] 649 / 0 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.009G021000 [exp] 639 / 0 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.018G130500 [exp] 517 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 506 / 1e-178 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.002G109000 [exp] 466 / 8e-163 AT4G24400 652 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Potri.006G186200 [exp] 461 / 6e-161 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002692 [exp] 772 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 771 / 0 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10042816 [exp] 660 / 0 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10028115 [exp] 659 / 0 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10022590 [exp] 568 / 0 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10019411 [exp] 528 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10021488 [exp] 501 / 1e-177 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10032822 [exp] 494 / 1e-173 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10036280 [exp] 457 / 2e-159 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 456 / 6e-159 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.002G177900.1 pacid=42777823 polypeptide=Potri.002G177900.1.p locus=Potri.002G177900 ID=Potri.002G177900.1.v4.1 annot-version=v4.1 ATGAGTGTCAAGGTACCGGCGGCGAGAACACGTGTAGGAAAGTACGAGTTAGGCAAGACCATTGGTGAAGGTAGCTTCGCCAAGGTCAAGGTCGCTAAAA ATGTTCAGACCGGTGATGTTGTTGCCATTAAAATTCTCGACCGTGATCAAGTCCTCCGTCACAAGATGGTCGAACAGTTAAAAAGAGAAATATCAACAAT GAAGCTGATTAAACATCCAAATGTCATCAAAATCTTTGAGGTCATGGCAAGTAAAACTAAGATCTACATTGTCATTGAGTTTGTTGACGGAGGAGAGCTC TTTGACAAAATTGCTAAGCACGGGAGACTTAAAGAGGACGAAGCCAGGAGATATTTCCAGCAGCTTATTAAAGCCGTGGATTACTGCCACAGTAGAGGCG TTTTCCATAGAGATTTGAAGCCTGAGAACCTTCTTCTTGATTCACGCGGTGTTCTTAAAGTTTCGGATTTTGGATTGAGTGCGCTGTCACAACAATTGCG GGGTGATGGGCTACTTCACACTGCCTGTGGAACACCAAATTATGTCGCACCTGAGGTTCTCAGAGACCAAGGTTATGATGGCACAGCATCCGATGTATGG TCCTGTGGGGTCATTCTCTATGTTCTTATGGCTGGATTCTTACCTTTTTCCGAGTCAAGTCTTGTGGTTTTGTACAGAAAAATCTGCAGAGCTGATTTCA CATTTCCATCGTGGTTTTCATCTGGTGCAAAGAAACTGATAAAGCGCATTCTTGACCCAAAACCTCTTACAAGGATAACAGTTTCTGAAATTTTAGAAGA TGAATGGTTCAAGAAAGGATACAAGCCACCGCAATTCGAGCAGGAAGAGGATGTAAATATAGATGATGTTGATGCTGTTTTTAATGACTCAAAGGAACAT CTTGTGACAGAAAGGAAGGTGAAACCAGTGTCAATTAATGCTTTCGAGCTTATTTCTAAAACACAAGGATTTAGCCTTGATAATTTGTTCGGGAAGCAGG CAGGTGTTGTGAAACGAGAAACCCATATTGCTTCTCATAGCCCAGCAAATGAAATCATGTCTAGAATTGAGGAAGCTGCAAAGCCTCTGGGCTTTAATGT CGATAAACGAAACTACAAGATGAAGTTGAAAGGTGACAAAAGTGGGAGGAAGGGCCAACTCTCCGTAGCTACTGAGGTGTTTGAGGTAGCTCCTTCTTTG CACATGGTGGAGCTGCGGAAAATTGGTGGCGATACGCTTGAGTTTCACAAGTTCTACAAGAGCTTCTCGTCAGGTTTAAAGGATGTAGTCTGGAAATCTG ATCAAACTATAGAAGGATTAAGGCCATAG
AA sequence Show only first row Show all	>Potri.002G177900.1 pacid=42777823 polypeptide=Potri.002G177900.1.p locus=Potri.002G177900 ID=Potri.002G177900.1.v4.1 annot-version=v4.1 MSVKVPAARTRVGKYELGKTIGEGSFAKVKVAKNVQTGDVVAIKILDRDQVLRHKMVEQLKREISTMKLIKHPNVIKIFEVMASKTKIYIVIEFVDGGEL FDKIAKHGRLKEDEARRYFQQLIKAVDYCHSRGVFHRDLKPENLLLDSRGVLKVSDFGLSALSQQLRGDGLLHTACGTPNYVAPEVLRDQGYDGTASDVW SCGVILYVLMAGFLPFSESSLVVLYRKICRADFTFPSWFSSGAKKLIKRILDPKPLTRITVSEILEDEWFKKGYKPPQFEQEEDVNIDDVDAVFNDSKEH LVTERKVKPVSINAFELISKTQGFSLDNLFGKQAGVVKRETHIASHSPANEIMSRIEEAAKPLGFNVDKRNYKMKLKGDKSGRKGQLSVATEVFEVAPSL HMVELRKIGGDTLEFHKFYKSFSSGLKDVVWKSDQTIEGLRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01140		PKS6, CIPK9, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G177900 [exp]	0	1
AT2G28470		BGAL8	beta-galactosidase 8 (.1.2)		Potri.011G044300 [exp]	3.74	0.9218	GAL1.6
AT5G46880	HD	HDG5, HB-7	HOMEODOMAIN GLABROUS 5, homeob...		Potri.003G096000 [exp]	4.35	0.9236
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Potri.017G124000 [exp]	5.29	0.8753
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	6.08	0.8644
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Potri.002G019800 [exp]	7.54	0.9201
AT5G16110			unknown protein		Potri.005G108633 [exp]	8.12	0.9001
AT3G60120		BGLU27	beta glucosidase 27 (.1)		Potri.005G059500 [exp]	9.16	0.9155
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.018G152600 [exp]	11.83	0.9126
AT1G51405			myosin-related (.1)		Potri.009G052400 [exp]	12.96	0.8850
					Potri.002G252400 [exp]	13.85	0.9035

Compare expression of checked genes

Potri.002G177900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.