Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KCS1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01120 827 / 0 KCS1 3-ketoacyl-CoA synthase 1 (.1) AT2G26640 646 / 0 KCS11 3-ketoacyl-CoA synthase 11 (.1) AT1G04220 640 / 0 KCS2 3-ketoacyl-CoA synthase 2 (.1) AT1G19440 629 / 0 KCS4 3-ketoacyl-CoA synthase 4 (.1) AT5G43760 614 / 0 KCS20 3-ketoacyl-CoA synthase 20 (.1) AT2G16280 608 / 0 KCS9 3-ketoacyl-CoA synthase 9 (.1) AT2G46720 580 / 0 KCS13, HIC HIGH CARBON DIOXIDE, 3-ketoacyl-CoA synthase 13 (.1) AT2G26250 570 / 0 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA synthase 10 (.1) AT1G68530 563 / 0 KCS6, CER6, POP1, G2, CUT1 POLLEN-PISTIL INCOMPATIBILITY 1, CUTICULAR 1, ECERIFERUM 6, 3-ketoacyl-CoA synthase 6 (.1.2) AT3G10280 558 / 0 KCS14 3-ketoacyl-CoA synthase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104300 [exp] 936 / 0 AT1G01120 775 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Potri.018G032200 [exp] 672 / 0 AT2G26640 867 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.006G249200 [exp] 668 / 0 AT2G26640 886 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.008G160000 [exp] 654 / 0 AT2G26640 821 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079500 [exp] 634 / 0 AT2G26640 758 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079700 [exp] 634 / 0 AT2G26640 756 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080400 [exp] 633 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G080200 [exp] 632 / 0 AT2G26640 759 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Potri.010G079400 [exp] 629 / 0 AT2G26640 793 / 0.0 3-ketoacyl-CoA synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012611 [exp] 895 / 0 AT1G01120 863 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10002691 [exp] 877 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10010108 [exp] 876 / 0 AT1G01120 868 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10030209 [exp] 875 / 0 AT1G01120 845 / 0.0 3-ketoacyl-CoA synthase 1 (.1) Lus10043300 [exp] 637 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10019446 [exp] 637 / 0 AT2G26640 897 / 0.0 3-ketoacyl-CoA synthase 11 (.1) Lus10026345 [exp] 625 / 0 AT1G19440 889 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10006637 [exp] 625 / 0 AT1G04220 819 / 0.0 3-ketoacyl-CoA synthase 2 (.1) Lus10042318 [exp] 623 / 0 AT1G19440 890 / 0.0 3-ketoacyl-CoA synthase 4 (.1) Lus10041177 [exp] 616 / 0 AT1G04220 782 / 0.0 3-ketoacyl-CoA synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF08392 [poplar] [flax] FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein CL0046 [poplar] [flax] Thiolase PF08541 [poplar] [flax] ACP_syn_III_C 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Representative CDS sequence Show only first row Show all	>Potri.002G178000.1 pacid=42779769 polypeptide=Potri.002G178000.1.p locus=Potri.002G178000 ID=Potri.002G178000.1.v4.1 annot-version=v4.1 ATGGGTTGTATAGAGATGGATAAGGAGAGGCTCACGGCTGAGATGGCCTTTAAGGACTCCTCCTCCGCCGTTATCAAGATTCGTCAGCATTTGCCGGACT TTCTACAGTCCGTTAAGCTCAAATACGTGAGGTTAGGTTATGGCTATTCGTGTAACCCTGCTACCATTCTCATGTTTCTCATAATTGTACCTTTATTTAT AGCCACACTTGTTCAGTTCACTGGTCTAGAACTAGACCGGGTTTATGAATTTTGGAGGACTCAGTCCCTTCATGAATTCCACGCGGCCACAAGACTTGCC GGTTCGGCCATTTTACTCTTTCTTCTTGCTCTCGTTTGCGCTAAACGGTCCAAGCCAGTCTATCTAGTCGACTTTGCATGTTACAAACCGGAAGACGAGC GTAAAATATCGGTGGATTCATTTTTAAAGATGACTGAAGATCTCGGGGTTTTTGAGGACGAGACTCTTCGATTCCAGACACGTATATCAACCCGGTCTGG TCTTGGCGATGAAACATATCTTCCGAGAGGAATAACATCTAGACCACCGAATTTGTCCCTGGAAGAAGCCCGGGTCGAGGCCGAATCAGTCATGTTTGGT GCACTAGACGATCTTTTTAGCAAAACCGGAGTTAAACCAAGAGATATTGGTATCCTTATTGTGAATTGCAGCTTATTTAATCCCACACCGTCTCTATCTT CCATGATAGTGAATCACTACAAGCTTAGAACGGATATCAAGAGTTACAATCTTGGCGGCATGGGTTGCAGCGCCGGGCTTATCTCTATTGACCTTGCAAA AGACCTACTCAGAGCAAACCCCAATACATATGCAGTTGTGGTAAGCACTGAAAACATCACTCTTAATTGGTATTTCGGTAATGATAGGTCAATGTTATTA TGCAACTGCATTTTTCGCATGGGTGGTGCTGCTGTTCTTCTCTCAAACAAAGCACGAGATCGTGTCCGGTCCAAGTATCAGCTGGTCCACACTGTTCGGA CCCACAAAGGAGCAGATGATAAAAACTACCGATGTGTTTATCAGAGAGAGGATGATAAAGGAGATATTGGGGTGTCCTTAGCTCGTGAATTAATGGCAGT AGCTGGTGATGCATTAAAAACGAATATCACCACATTGGGTCCCTTAGTTCTGCCTTTAAGTGAACAGTTTATGTTTTTTGTCGCACTTCTTAGAAGAAAG CTGTTGAAAGCCAGAATCAAGCCTTACATACCTGATTTCAAGCTTGCATTCGAACATTTTTGCATCCATGCTGGAGGTAGAGCTGTTTTGGACGAGTTAC AAAAGAATCTGCAACTCAGTGACTGGCACATGGAGCCATCAAGAATGAGTTTGTACAGGTTTGGTAACACATCAAGTAGTTCATTGTGGTATGAACTGGC TTACACTGAGGCAAAGGGTCGGGTTGTAGCCGGGGACCGGGTATGGCAGATTGCATTCGGGTCGGGTTTCAAGTGCAACAGTGCTGTTTGGAAAGCACTG AGGGAGATTCCAGCGGGTGAGTCAAAGGGTAACCCGTGGAATGACTCGATTGACTGGTACCCGGTCAAGGTTCCCTCGGCCTGA
AA sequence Show only first row Show all	>Potri.002G178000.1 pacid=42779769 polypeptide=Potri.002G178000.1.p locus=Potri.002G178000 ID=Potri.002G178000.1.v4.1 annot-version=v4.1 MGCIEMDKERLTAEMAFKDSSSAVIKIRQHLPDFLQSVKLKYVRLGYGYSCNPATILMFLIIVPLFIATLVQFTGLELDRVYEFWRTQSLHEFHAATRLA GSAILLFLLALVCAKRSKPVYLVDFACYKPEDERKISVDSFLKMTEDLGVFEDETLRFQTRISTRSGLGDETYLPRGITSRPPNLSLEEARVEAESVMFG ALDDLFSKTGVKPRDIGILIVNCSLFNPTPSLSSMIVNHYKLRTDIKSYNLGGMGCSAGLISIDLAKDLLRANPNTYAVVVSTENITLNWYFGNDRSMLL CNCIFRMGGAAVLLSNKARDRVRSKYQLVHTVRTHKGADDKNYRCVYQREDDKGDIGVSLARELMAVAGDALKTNITTLGPLVLPLSEQFMFFVALLRRK LLKARIKPYIPDFKLAFEHFCIHAGGRAVLDELQKNLQLSDWHMEPSRMSLYRFGNTSSSSLWYELAYTEAKGRVVAGDRVWQIAFGSGFKCNSAVWKAL REIPAGESKGNPWNDSIDWYPVKVPSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	0	1	Pt-KCS1.1
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.008G160000 [exp]	1.41	0.9512
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.001G041500 [exp]	2.00	0.9168
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	2.44	0.9442
AT5G43290	WRKY	ATWRKY49, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.016G099900 [exp]	4.24	0.8535
AT1G34110			Leucine-rich receptor-like pro...		Potri.005G198000 [exp]	6.00	0.9015
AT3G43720			Bifunctional inhibitor/lipid-t...		Potri.009G158100 [exp]	6.92	0.8741
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.006G097800 [exp]	7.07	0.9074
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.015G100800 [exp]	8.48	0.8639
AT3G45070			P-loop containing nucleoside t...		Potri.010G138400 [exp]	8.48	0.8703
AT4G14940		ATAO1	amine oxidase 1 (.1)		Potri.010G088900 [exp]	9.16	0.8498

Compare expression of checked genes

Potri.002G178000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.