Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00830 558 / 0 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT3G52660 373 / 2e-125 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G28390 124 / 2e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G44710 105 / 1e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G36960 87 / 2e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G33410 80 / 7e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G47620 77 / 7e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G71770 76 / 2e-14 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G14300 74 / 4e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 74 / 4e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104500 [exp] 754 / 0 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.016G079200 [exp] 401 / 5e-136 AT3G52660 449 / 4e-155 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G163400 [exp] 400 / 1e-135 AT3G52660 400 / 9e-136 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G212400 [exp] 398 / 4e-135 AT3G52660 473 / 1e-164 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.004G201900 [exp] 395 / 2e-133 AT3G52660 422 / 2e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G116400 [exp] 140 / 2e-35 AT2G44710 325 / 1e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G014100 [exp] 128 / 2e-31 AT2G44710 322 / 8e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G139700 [exp] 122 / 2e-29 AT2G44710 585 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G051500 [exp] 122 / 2e-29 AT2G44710 627 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030207 [exp] 567 / 0 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10002689 [exp] 560 / 0 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10043390 [exp] 395 / 3e-134 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10034195 [exp] 392 / 3e-133 AT3G52660 444 / 7e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10021351 [exp] 374 / 1e-125 AT3G52660 478 / 3e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017026 [exp] 252 / 8e-79 AT3G52660 320 / 2e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10033990 [exp] 124 / 7e-30 AT2G44710 301 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012785 [exp] 119 / 2e-28 AT2G44710 305 / 4e-92 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10028162 [exp] 118 / 6e-28 AT2G44710 675 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006396 [exp] 86 / 3e-18 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G178200.3 pacid=42777137 polypeptide=Potri.002G178200.3.p locus=Potri.002G178200 ID=Potri.002G178200.3.v4.1 annot-version=v4.1 ATGGCAGAGGGCACAGAAATTGAGGAACGAGTGGATCTTGAAGAAGACAATTATATGGAAGAGATAGACGATGATGTTCAAGATCAACTAGATGAGGATG GAGAAGATGATGCTGGAGATGCACATGCTGAAGAAAATGTTGAAGAGGAGTATGAGGACTCAAAGCCCGAGGGCAGTCAGAAAGATCAATCTCCAGAAGC AGATAGAAGCCTTCCCAACGCTGAACCTGTGGAGGATGAACAAAAGCCCACTGCTTCGGTTAAAAAAGAGGAAAAGGATAAGCATGCTCAACTACTTTCT CTTCCTCCTCACGGTTCTGAAGTTTTCATTGGTGGACTTCCGAAGGATGTAATCGAAGATGAATTGAGGGATCTCTGTGAAACGATAGGCGAAATTTTTG AGATAAGGCTAATGAAAGATAAAGACACTGGTGAAAGCAAGGGTTTTGCTTTTGTAGCATTCAAATCAAAGGAGGTTGCTCGAAAAGCCACTGAAGAGCT TCGTAGTAAAGACTACAAGGGAAAAACCTTAAGGTGTTCAATATCTGAAACAAAAAATAGATTGTTTATTGGTAATGTTCCAAAGAACTTGACAGAGGAT GAGTTTAGAAAAATCATTGAAGAGGTTGGTCCCGGGATGGAAGTTCTTGAGCTCATAAAGGATCCTCAAACTCCAACTCGCAACCGTGGTTTTGCTTTTA TATTGTATTACAATAATGCTTGTGCTGATTATTCAAGGCAGAAAATGTTAAATGCTAATTTTAAGCTTGATGGTCATACCCCCACTGTTAGCTGGGCTGA TCCAAAGGGCATGCCTCCTGATCATTCTCCTGCTGCTGCTGGCCAGGTTAAGGCTCTGTATGTGAAAAACATACCTGAGAACACCTCCACTGAGAAACTG AAGGAACTATTCCAGCGCCATGGGGATGTGACTAAAGTTGTTACACCACCTGGAAAAGCTGGAAAACGAGATTTTGGGTTCATTCACTATGCTGAAAGGT CAAGTGCATTGAAGGCAGTCAGAGATACAGAGAAATATGAAATCGATGGTCAGTTGTTGGAGGTTGTTCTTGCTAAGCCTCAGGCTGATAAAAAACCTGA TGGATCTTATCCTTACAACGCTGGAGTTAATCCAAACCCAGTCCCCCTTCCTGCATATAGTGGATTTGCAGGGAATCCACATGGCTCTTTGGGCACTGGA TTTGGTGTTGCTGCCGGTTTTCAGCAGCCAGTTATATATGGTAGGGGTCCAATGCCAGCAGGAATGCATATGGTACCGATGGTTTTACCAGATGGTCGAA TTGGCTACGTCCTTCAGCAGCCTGGAGTACAGATGCCACAGCCTCAGCCTCGAAGAGTTGATCGGAGCAATAGTCCAAGTGGGCCTGGGCGAGCTGGTAG TAGTGGTGATGATGGCAATCGCGGAAGAAGGTACCGACCTTATTAG
AA sequence Show only first row Show all	>Potri.002G178200.3 pacid=42777137 polypeptide=Potri.002G178200.3.p locus=Potri.002G178200 ID=Potri.002G178200.3.v4.1 annot-version=v4.1 MAEGTEIEERVDLEEDNYMEEIDDDVQDQLDEDGEDDAGDAHAEENVEEEYEDSKPEGSQKDQSPEADRSLPNAEPVEDEQKPTASVKKEEKDKHAQLLS LPPHGSEVFIGGLPKDVIEDELRDLCETIGEIFEIRLMKDKDTGESKGFAFVAFKSKEVARKATEELRSKDYKGKTLRCSISETKNRLFIGNVPKNLTED EFRKIIEEVGPGMEVLELIKDPQTPTRNRGFAFILYYNNACADYSRQKMLNANFKLDGHTPTVSWADPKGMPPDHSPAAAGQVKALYVKNIPENTSTEKL KELFQRHGDVTKVVTPPGKAGKRDFGFIHYAERSSALKAVRDTEKYEIDGQLLEVVLAKPQADKKPDGSYPYNAGVNPNPVPLPAYSGFAGNPHGSLGTG FGVAAGFQQPVIYGRGPMPAGMHMVPMVLPDGRIGYVLQQPGVQMPQPQPRRVDRSNSPSGPGRAGSSGDDGNRGRRYRPY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.002G178200 [exp]	0	1
AT4G18375			RNA-binding KH domain-containi...		Potri.004G066100 [exp]	2.00	0.8279
AT4G33495		RPD1	ROOT PRIMORDIUM DEFECTIVE 1, U...		Potri.015G141700 [exp]	10.77	0.8189
AT5G64270			splicing factor, putative (.1)		Potri.017G050800 [exp]	14.49	0.8103
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127400 [exp]	16.12	0.8109
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	17.91	0.8140	GTE910
AT1G74120			Mitochondrial transcription te...		Potri.018G051600 [exp]	31.96	0.8049
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.003G196900 [exp]	34.05	0.7701
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.013G056600 [exp]	34.87	0.8014
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Potri.004G196300 [exp]	37.58	0.7994
AT4G26620			Sucrase/ferredoxin-like family...		Potri.001G369300 [exp]	38.96	0.7426

Compare expression of checked genes

Potri.002G178200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.