Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 785 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 763 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 761 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 733 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 730 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 478 / 4e-163 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 347 / 1e-116 FAD-dependent oxidoreductase family protein (.1) AT3G47930 54 / 3e-07 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178400 [exp] 1074 / 0 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 498 / 7e-171 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 56 / 5e-08 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.016G064800 [exp] 54 / 2e-07 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012610 [exp] 769 / 0 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010105 [exp] 709 / 0 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 660 / 0 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 645 / 0 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 642 / 0 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 620 / 0 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 496 / 1e-169 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010107 [exp] 256 / 1e-81 AT2G46760 262 / 2e-84 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010106 [exp] 134 / 1e-36 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 140 / 1e-30 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF04030 [poplar] [flax] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Potri.002G178300.1 pacid=42778847 polypeptide=Potri.002G178300.1.p locus=Potri.002G178300 ID=Potri.002G178300.1.v4.1 annot-version=v4.1 ATGTCTGTGAATGTAAAATTATATATAAAAAAAAAACTCTTCTCAACCAAGCCATTGTCAATACTCAAGAAAATGGAAAAATTCCAGCGAGTCCTCCTAT CAGCCAGCTGTCTCCTATTGGCGGTCTTTATGGTGGGTTGCAGCCCCCCGGAGAACCACATCAAATGCTCATCGACAAACACAAACTGCACTATCACAAA CTCGTATGGCACTTTCCCTGATCGCAGCATATGTCAAGCAGCAAACGCGGCATACCCCACCACAGAAGAGGAGCTGATTTCAATAGTAGCAGCAGCGACC AAGGCCAAAAGAAAGGTGAAGGTGGCAACTCGTTATTCTCATAGCATCCCTAAACTAGTTTGCCCAGATGGCCAAAATGGATTGCTTATAAGCACCGATT ACCTCAATCGTACACTGGAAATTGACGTTCAATCGATGACAATGAGCGTAGAAAGTGGAGTCACTCTGAGACAGCTTATCAACGAGGCTGCCAAGGCTGG CCTTGCATTGCCTTACTCGCCATATTGGTGGGGCTTGACCATTGGTGGCCTATTGAGCACGGGTGCGCACGGCAGCACATTGTGGGGAAAAGGGAGTGCA ATTCATGATTATGTGGTGGCACTAACAATTATTAGCCCTGGAGGACCGGAAGATGGTTATGCTAAGGTCCGGAGCCTAGACGAGAGTAATAGTGCTGAAC TTGATGCTGCCAAGGTCTCGCTTGGAGTTCTTGGAGTTATTTCGAAGGTTACTCTGCAACTGCAACCCCTCTTTAAAAGATCCATTTCCTATGAGGTGAA GAAAGATACTGATCTGGGAGATCAAGTGGCTAGCTTTGGGAGACAACATGAGTTTGCAGACATAACGTGGTATCCTAGTCAAGGCAAGGCAGTCTACCGA ATTGATGATCGGATTTCTTCTAATACCTCTGGCAATGGCCTATACGACTACATCCCCTTCCGCTCTACTCCTTCTCTCGGATTGGCCGTCGTTAGAGCTA CAGAGGACGCTCAAGAATCCTTGAAAGACCCTGATGGGAAGTGCGCCAGCGCAAAACTAATTACATCCACCCTCAAGAACTTGGCTTACGGACTAACTAA CAATGGAATAGTTTTCACGGGTTATCCTATAATTGGGTACCACAATCGCCTACAGTCGTCAGGAACTTGTCTTGATAGCCCTGAAGATGCAATGATCACG GCATGTCCATGGGATTCAAGAATTAAGGGCGAGTATTTTTTCCAAGCCACATTCAGTATTAGCCTGTCAGTTGTGAAGAGCTTCATCCAAGATGTGCAAA TGCTCGTCAAACTCGATCCTAGAGCATTATGTGGCCTAGAACAATACAATGGTATCCTCATGCGCTATGTGAAGGCCTCAAGTGCCTACTTGGGCAAGGA AGATGATGCCTTGGATTTTGATATTACATTCTATCGAAACAAAGACCCCGCGAAACCCAGACTTTATGAAGACATACTTGAAGAGATTGAGCAACTCGCA GTGTTTAAGTACGGAGGTTTGCCACATTGGGGAAAGAACAGAAACCTAGTGTTCAACGGTGCACTCAAGAAATACAAAAATGCTGGAGCATTTCTGAGGG TAAAGGAGATGTATGATCCACTGGGGCTCTTTTCCAACGAGTGGACAGACCAAGTCCTTGGACTGAAAGGAGATGTGAACATAATAAAAGAGGGCTGTGC ACTGGAAGGATTGTGTATATGCTCACAAGACATTCATTGCGCACCAAGCAAGGGCTATCTCTGTAGAGCAGGGAAAATTTATCAAGAAGCAAGGGTTTGT GCCCATGTTAGCACTCCGGAGCAGTAA
AA sequence Show only first row Show all	>Potri.002G178300.1 pacid=42778847 polypeptide=Potri.002G178300.1.p locus=Potri.002G178300 ID=Potri.002G178300.1.v4.1 annot-version=v4.1 MSVNVKLYIKKKLFSTKPLSILKKMEKFQRVLLSASCLLLAVFMVGCSPPENHIKCSSTNTNCTITNSYGTFPDRSICQAANAAYPTTEEELISIVAAAT KAKRKVKVATRYSHSIPKLVCPDGQNGLLISTDYLNRTLEIDVQSMTMSVESGVTLRQLINEAAKAGLALPYSPYWWGLTIGGLLSTGAHGSTLWGKGSA IHDYVVALTIISPGGPEDGYAKVRSLDESNSAELDAAKVSLGVLGVISKVTLQLQPLFKRSISYEVKKDTDLGDQVASFGRQHEFADITWYPSQGKAVYR IDDRISSNTSGNGLYDYIPFRSTPSLGLAVVRATEDAQESLKDPDGKCASAKLITSTLKNLAYGLTNNGIVFTGYPIIGYHNRLQSSGTCLDSPEDAMIT ACPWDSRIKGEYFFQATFSISLSVVKSFIQDVQMLVKLDPRALCGLEQYNGILMRYVKASSAYLGKEDDALDFDITFYRNKDPAKPRLYEDILEEIEQLA VFKYGGLPHWGKNRNLVFNGALKKYKNAGAFLRVKEMYDPLGLFSNEWTDQVLGLKGDVNIIKEGCALEGLCICSQDIHCAPSKGYLCRAGKIYQEARVC AHVSTPEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178300 [exp]	0	1
AT5G53050			alpha/beta-Hydrolases superfam...		Potri.012G017100 [exp]	1.41	0.8230
AT2G02970			GDA1/CD39 nucleoside phosphata...		Potri.008G086400 [exp]	2.44	0.7242
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	4.00	0.7092
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Potri.001G287200 [exp]	4.79	0.6777
AT5G11540			D-arabinono-1,4-lactone oxidas...		Potri.018G039600 [exp]	8.24	0.7197
AT1G48850		EMB1144	embryo defective 1144, chorism...		Potri.008G040700 [exp]	15.00	0.6763
AT2G32970			unknown protein		Potri.002G224900 [exp]	18.24	0.7086
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Potri.004G188100 [exp]	19.33	0.6779
AT1G04410		c-NAD-MDH1	cytosolic-NAD-dependent malate...		Potri.002G141700 [exp]	22.36	0.7139
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.002G216000 [exp]	24.12	0.7207

Compare expression of checked genes

Potri.002G178300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.