Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46760 810 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 783 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 782 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 751 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 750 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G11540 491 / 1e-167 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 345 / 6e-116 FAD-dependent oxidoreductase family protein (.1) AT3G47930 55 / 9e-08 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G178300 [exp] 1109 / 0 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.018G039600 [exp] 519 / 5e-179 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 57 / 2e-08 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2) Potri.016G064800 [exp] 57 / 4e-08 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012610 [exp] 771 / 0 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010105 [exp] 716 / 0 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 682 / 0 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 666 / 0 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 643 / 0 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10004735 [exp] 642 / 0 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10038620 [exp] 513 / 3e-176 AT5G11540 732 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010107 [exp] 259 / 5e-83 AT2G46760 262 / 2e-84 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010106 [exp] 156 / 7e-45 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 147 / 5e-37 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF04030 [poplar] [flax] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Potri.002G178400.1 pacid=42778626 polypeptide=Potri.002G178400.1.p locus=Potri.002G178400 ID=Potri.002G178400.1.v4.1 annot-version=v4.1 ATGTTATATGTGTGTGTATATATATATATATATAGGTGTCCACGGATCATCATCTTCTCAACCTATCTATTGTCAATACTCAAGAAAATGGAAATATTCC AGCAAATCCTCCTATCAACCAGCGGCCTCCTATTGGCGGTCTTTATGGTGGCTTGCAGCCCCCCGGAGAACCATATCAAATGTTCATCAACAAACACAAA CTGCACCATCACAAACTCTTATGGCACTTTCCCTGATCGCAGCTTATGTCAAGCAGCAAACGTGGCATACCCCACCACAGAAGAGGAGCTAATTTCAATA GTAGCCGGAGCGACGGAGGCCGAAAGAAAGGTGAAAGTAGCAACTCGTTATTCTCATAGCATCCCCAAACTAGTTTGCCCAGATGGCCAAAACGGATTGC TTATAAGCACCAATTACCTCAATCGCACACTGGAAATTGACGTTCAATCGATGAAAATGAGCGTAGAAAGTGGAGTCACTCTGAGACAGCTTATCAACGA GGCTGCCAAGGCTGGCCTTGCATTGCCTTACTCTCCATATTGGTGGGGCTTGACCATTGGTGGCCTATTGAGCACGGGTGCGCACGGCAGCACATTGTGG GGAAAAGGGAGTGCAATTCATGATTATGTGGTGGCACTAACAATTATTAGCCCTGGAGGACCGGAAGATGGTTATGCTAAGGTCCGGAGCCTCGACGAGA GTAATAGTACTGAACTTAATGCTGCCAAGGTCTCGCTTGGAGTTCTTGGAGTTATTTCGAAGGTTACTCTGCAACTGCAACCCCTCTTTAAAAGATCCAT TTCCTATGTGGTGAAGAAAGATACTGACCTGGGAGATCAAGTGGCTAGCTTTGGTAGACAACATGAGTTCGCAGACATAACGTGGTATCCTAGTCAAGGC AAGGCAGTCTATCGAATTGATGATCGGATTTCTTCTAATACCTCTGGCAATGGCCTTTACGACTACATCGCCTTCCGCTCTACTCTTTCTCTCGGATTGG CCGCCATTAGAGCTACAGAGGACGCTCAAGAATCCTTGAAAGACCCTGATGGGAAGTGCGCCAGCGCAAAACTAATTACATCCACCCTCGTGAACTTGGC TTATGGACTAACTAACAATGGAATAGTTTTCACGGGTTATCCTATAATTGGGTACCACAATCGCCTACAGTCGTCAGGAACTTGTCTTGATAGCCCTGAA GATGCATTGATCACGGCATGTCCATGGGATTCAAGAATTAAGGGCGAGTATTTTTTCCAAGCCACATTCAGTATCAGCCTGTCAGTTGTGAAGAGCTTCA TTCAAGATGTGCAAAACCTCGTCAAACTGGAGCCTAGAGCATTATGTGGCCTAGAACAATACAATGGTATCCTCATGCGCTACGTGAAGGCATCAAGTGC CTACCTGGGCAAGGAAGATGATGCTTTGGATTTTGATATGACATTCTACCGAAACAAAGACCCCACGAAACCTAGACTTTATGAAGACATATATGAAGAA ATTGAGCAACTCGCAGTGTTTAAGTACGGAGGTTTGCCACATTGGGGAAAGAACAGAAACCTAGTGTTCAACGGTGCACTCAAGAAATACAAAAATGCTG GAGCATTTCTGAGGGTAAAGGAGATGTATGATCCACTGGGGCTCTTTTCCAACGAGTGGGCAGACCAAGTCCTTGGACTGAAAGGAGAGGTGAACATAAT AAAAGAGGGATGTGCACTGGAAGGATTGTGTATATGCTCACAAGACATTCATTGCGCACCAAGAGATGGCTATCTCTGTAGAGCAGGGAAAATTTATCAA GATGCAAGGGTTTGTGCCCTTGTTAGCAATTCTGAGCAGTAA
AA sequence Show only first row Show all	>Potri.002G178400.1 pacid=42778626 polypeptide=Potri.002G178400.1.p locus=Potri.002G178400 ID=Potri.002G178400.1.v4.1 annot-version=v4.1 MLYVCVYIYIYRCPRIIIFSTYLLSILKKMEIFQQILLSTSGLLLAVFMVACSPPENHIKCSSTNTNCTITNSYGTFPDRSLCQAANVAYPTTEEELISI VAGATEAERKVKVATRYSHSIPKLVCPDGQNGLLISTNYLNRTLEIDVQSMKMSVESGVTLRQLINEAAKAGLALPYSPYWWGLTIGGLLSTGAHGSTLW GKGSAIHDYVVALTIISPGGPEDGYAKVRSLDESNSTELNAAKVSLGVLGVISKVTLQLQPLFKRSISYVVKKDTDLGDQVASFGRQHEFADITWYPSQG KAVYRIDDRISSNTSGNGLYDYIAFRSTLSLGLAAIRATEDAQESLKDPDGKCASAKLITSTLVNLAYGLTNNGIVFTGYPIIGYHNRLQSSGTCLDSPE DALITACPWDSRIKGEYFFQATFSISLSVVKSFIQDVQNLVKLEPRALCGLEQYNGILMRYVKASSAYLGKEDDALDFDMTFYRNKDPTKPRLYEDIYEE IEQLAVFKYGGLPHWGKNRNLVFNGALKKYKNAGAFLRVKEMYDPLGLFSNEWADQVLGLKGEVNIIKEGCALEGLCICSQDIHCAPRDGYLCRAGKIYQ DARVCALVSNSEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46760			D-arabinono-1,4-lactone oxidas...		Potri.002G178400 [exp]	0	1
AT3G52360			unknown protein		Potri.006G200000 [exp]	5.47	0.7518
AT5G57670			Protein kinase superfamily pro...		Potri.006G173700 [exp]	8.83	0.7823
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214700 [exp]	15.62	0.7840
AT1G30820			CTP synthase family protein (....		Potri.003G157900 [exp]	19.07	0.7107
AT1G47840		HXK3	hexokinase 3 (.1)		Potri.005G238600 [exp]	21.49	0.7398
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.012G079200 [exp]	27.83	0.7017
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Potri.007G099800 [exp]	50.07	0.6869	Pt-GAL1.5
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G099400 [exp]	73.16	0.6796
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	80.67	0.7023
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Potri.014G101500 [exp]	93.76	0.6739

Compare expression of checked genes

Potri.002G178400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.