Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00820 459 / 4e-157 IQD17 IQ-domain 17 (.1) AT1G01110 440 / 2e-149 IQD18 IQ-domain 18 (.1.2) AT4G10640 221 / 5e-66 IQD16 IQ-domain 16 (.1) AT2G26180 116 / 6e-28 IQD6 IQ-domain 6 (.1) AT5G03040 108 / 5e-25 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 106 / 1e-24 IQD3 IQ-domain 3 (.1) AT3G22190 101 / 7e-23 IQD5 IQ-domain 5 (.1.2) AT3G59690 97 / 4e-21 IQD13 IQ-domain 13 (.1) AT1G72670 94 / 2e-20 IQD8 IQ-domain 8 (.1) AT3G49260 93 / 5e-20 IQD21 IQ-domain 21 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104600 [exp] 750 / 0 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.001G448100 [exp] 432 / 5e-146 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.011G153400 [exp] 419 / 5e-141 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.015G005900 [exp] 332 / 1e-107 AT4G00820 277 / 1e-86 IQ-domain 17 (.1) Potri.012G022500 [exp] 319 / 2e-102 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.010G218100 [exp] 135 / 6e-34 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 131 / 5e-33 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.006G131100 [exp] 128 / 8e-32 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 121 / 2e-29 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010104 [exp] 422 / 3e-142 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 409 / 4e-137 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10008269 [exp] 286 / 8e-90 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10033237 [exp] 192 / 4e-56 AT1G01110 183 / 8e-55 IQ-domain 18 (.1.2) Lus10036508 [exp] 125 / 2e-30 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 120 / 3e-29 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 109 / 1e-25 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 110 / 2e-25 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10013362 [exp] 106 / 2e-24 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10013522 [exp] 105 / 6e-24 AT2G26180 403 / 2e-138 IQ-domain 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.002G178500.1 pacid=42779597 polypeptide=Potri.002G178500.1.p locus=Potri.002G178500 ID=Potri.002G178500.1.v4.1 annot-version=v4.1 ATGGGGAAGAAGGGAGGTAGCTCATGGTTGACTGCTGTGAAAAGGGCGTTTAGATCTCCAACTAAAGAAAGTGACAAGAGGGCTACTGGGGTTGGCCATG ACCAAGAAGAAGATGAAGAAAAGAAGAGAGGGAAGAGAAGATGGTTATTTAGGAAACCTACAAATCAAGAAACGGCGACACAACAGAACCTGTCAAAGGC AGGAAATGTTAAGGCATCCCCAGGTGGTGGTGGAGGTGCTCCAGCAGACCATGTGTCGGCAGCTGCAGCAGCTGAGCAAAGGCATGCAATTGCAGTAGCA GTTGCTACTGCAGCTGCAGCTGAAGCTGCTGTAGCCACTGCCCAGGCGGCGGCGGAGGTTGCTCGGCTCACTAGGCCTTCATATCATCCTAGAGAACATT ATGCTGCCATTGTCATTCAAACAGCTTTTAGAGGATACTTGGCAAGGCGGGCTCTTCGTGCACTTAAAGGGCTAGTGAAGTTGCAAGCTTTAGTAAGGGG ACACAATGTGAGAAAACAGGCCAAGATGACCCTGCGATGCATGCAAGCTCTGGCTCGAGTGCAGGCTCGAGTGCTTGATCAACGCGTGAGACTTTCACAT GAAGGCAGCAGGAAATCTGCATTTAGTGACACCAATAGCGTGCTTGAATCGCGATATCTTCAAGACATTTCAGATAGAAAATCCATGTCAAGAGAAAGCA GTAGCATTGCAGATGATTGGGATGATCGGCCACACTCCATTGAGGAAGTCAAGGCCATGTTGCAACGCAGGAAAGAAGCTGCGTTCAAGCGTGAAAAGAC CTTATCTCAAGCTTTCTCTCAGCAGATATGGAGAAATGGCAGAAGCCCATCAAATGGCAATGAAGATGAGCTCCAAGAAAGACCACAATGGCTTGATCAA TGGATGCCTGCAAAGCCATGGGACAATAGCAGCAGAGCAAGAGCTTCAACTGATCAAAGAGACCCCATCAAAACTGTAGAAATTGACACCTCCCAACCTT ATTCATATTTAGTTCCTAATTTTAGAAGAACAAACCAAAACCAACATCACCAACACCAGAGATCCAATTCATCAAACAATGGTGTGGCACACTCTGCTCC TTCTCCACTCCATAGAGCTCATCAAACTGCTCCACTCCACCACTCTCCTATCACACCCTCCCCATCAAAAACTAGGCCTCTTCAGGTTCGTTCAGCTAGT CCACGATGTGCAAGAGAAGATAGAAGTTGTAATTCCTCTCAAACACCAAGTTTAAGGTCCAATTATTTTTACAATGGAAGTTTGAATCAACATGGAATCA GGGGTGGTGCTAGTGTTAGTAGTAATGGTAATGCTACATTGCCAAATTACATGGCTGCAACCGAGTCTGCCAAGGCTAGATTGAGATCACAGAGTGCACC AAGGCAAAGACCATCAACACCAGAACGAGACCGGATTGGGTCTGCAAGAAAACGGCTTTCGTATCCAGCCCCCGACCCTTGTGATGTCGGTATAGTTTAT GGCGGTGCTGGTTACGGCCATGGTTTAAGGAGTCCAAGCTTTAAGAGCGTGAGCGGTTCACGTTTGGGTGGACTAGAACAACAGTCTAACTATTCTTCTT GCTGTACGGATAGCTTTGGTGGTGAGCTTTCCCCTTCTTCAACTAACGATCTTAGGAGGTGGTTGAGATGA
AA sequence Show only first row Show all	>Potri.002G178500.1 pacid=42779597 polypeptide=Potri.002G178500.1.p locus=Potri.002G178500 ID=Potri.002G178500.1.v4.1 annot-version=v4.1 MGKKGGSSWLTAVKRAFRSPTKESDKRATGVGHDQEEDEEKKRGKRRWLFRKPTNQETATQQNLSKAGNVKASPGGGGGAPADHVSAAAAAEQRHAIAVA VATAAAAEAAVATAQAAAEVARLTRPSYHPREHYAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALARVQARVLDQRVRLSH EGSRKSAFSDTNSVLESRYLQDISDRKSMSRESSSIADDWDDRPHSIEEVKAMLQRRKEAAFKREKTLSQAFSQQIWRNGRSPSNGNEDELQERPQWLDQ WMPAKPWDNSSRARASTDQRDPIKTVEIDTSQPYSYLVPNFRRTNQNQHHQHQRSNSSNNGVAHSAPSPLHRAHQTAPLHHSPITPSPSKTRPLQVRSAS PRCAREDRSCNSSQTPSLRSNYFYNGSLNQHGIRGGASVSSNGNATLPNYMAATESAKARLRSQSAPRQRPSTPERDRIGSARKRLSYPAPDPCDVGIVY GGAGYGHGLRSPSFKSVSGSRLGGLEQQSNYSSCCTDSFGGELSPSSTNDLRRWLR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.002G178500 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Potri.006G204700 [exp]	4.35	0.8413
AT5G19290			alpha/beta-Hydrolases superfam...		Potri.008G040000 [exp]	19.62	0.7770
					Potri.001G022601 [exp]	19.74	0.8272
AT5G03110			unknown protein		Potri.016G086900 [exp]	21.84	0.8208
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.005G038800 [exp]	25.61	0.8205
AT3G54810	GATA	GATA8, BME3, BM...	GATA TRANSCRIPTION FACTOR 8, B...		Potri.008G038900 [exp]	31.30	0.8200
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.012G057300 [exp]	34.81	0.8123
AT2G42040			unknown protein		Potri.006G193500 [exp]	59.74	0.7919
AT1G62870			unknown protein		Potri.001G116600 [exp]	63.48	0.7777
AT5G01090			Concanavalin A-like lectin fam...		Potri.006G094900 [exp]	81.63	0.7800

Compare expression of checked genes

Potri.002G178500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.