Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46770 366 / 1e-125 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G61910 304 / 8e-102 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1) AT1G32770 294 / 2e-97 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT4G10350 255 / 2e-82 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT1G79580 246 / 1e-78 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G33280 242 / 9e-78 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT4G36160 242 / 9e-77 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT2G18060 236 / 1e-74 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT5G66300 231 / 7e-74 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT1G12260 229 / 1e-71 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104800 [exp] 619 / 0 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G448400 [exp] 391 / 1e-134 AT1G32770 295 / 4e-97 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Potri.011G153300 [exp] 387 / 4e-133 AT2G46770 297 / 4e-98 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.010G176600 [exp] 258 / 8e-84 AT1G79580 344 / 8e-118 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.008G080000 [exp] 255 / 9e-83 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.013G092400 [exp] 254 / 9e-82 AT4G10350 436 / 5e-154 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.019G066000 [exp] 246 / 2e-78 AT4G10350 451 / 8e-160 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.007G014400 [exp] 242 / 8e-77 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.012G126500 [exp] 238 / 2e-75 AT1G12260 348 / 3e-118 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002687 [exp] 362 / 7e-123 AT2G46770 358 / 1e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10030205 [exp] 357 / 8e-121 AT2G46770 357 / 5e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10001664 [exp] 309 / 1e-102 AT1G32770 343 / 2e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10017340 [exp] 308 / 2e-102 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033239 [exp] 290 / 4e-95 AT1G32770 318 / 2e-106 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10009939 [exp] 251 / 5e-82 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10008271 [exp] 242 / 2e-79 AT1G32770 277 / 8e-94 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10039153 [exp] 247 / 2e-78 AT4G10350 327 / 4e-110 BEARSKIN 2, NAC domain containing protein 70 (.1) Lus10013782 [exp] 246 / 3e-78 AT4G10350 325 / 5e-110 BEARSKIN 2, NAC domain containing protein 70 (.1) Lus10031142 [exp] 237 / 1e-75 AT1G12260 351 / 4e-120 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.002G178700.1 pacid=42777545 polypeptide=Potri.002G178700.1.p locus=Potri.002G178700 ID=Potri.002G178700.1.v4.1 annot-version=v4.1 ATGACAGAAAACATGAGTATATCTGTGAATGGGCAATCTCAGGTCCCTCCTGGCTTTCGATTTCACCCCACAGAAGAAGAGCTCTTGGATTACTACTTGA GGAAGAAGGTCTCGTATGAGAAGATTGACTTAGAAGTGATCCGAGATGTTGATCTTAATAAGCTCGAACCATGGGATATACAGGAGAGATGCAAAATAGG AACCGCCCCACAAAACGATTGGTACTTCTTTAGCCACAAGGACAAGAAATATCCAGCCGGCACGCGCACCAATCGAGCAACTGCTGCGGGATTTTGGAAG GCTACTGGCCGTGACAAGGTGATATACGGCACTGGCAAGCGGGTTGGAATGAGGAAGACTCTCGTGTTCTACAAAGGCCGAGCCCCACATGGACAAAAAT CCGATTGGATTATGCATGAATATAGGCTGGACGATAATCCCAGTGAAACCAATGTCTCCAATGTTATGGGAGAGGCAGCACAGGAAGATGGCTGGGTGGT TTGCCGTATCTTCAAGAAGAAAAATCTCAACAAAACCCTAGACAGAGCTATGAGTTCATCACCCATCACTGCAGATACCAGGAACCAGACGTTAAGTTCT TGCAATGAGGGCTCTCTAGATCAAATGCTTCATTACATGGGAAGTACTTGCAAAGAAGAAAATGAAGCAGATAATAGTGCTAGATATCTTTGGCCTATTG ACACAGCAATCAACCATGTCCACCATGATAATAGATTCATGGAACTTCCAAGCTTAGAGAGTCCAAACTCTACCAGTAGCCTAAACTTTTACCAATCCAT GATCACAGAAAATGAAGGTTCAATAACTAACCAGGTGAGTTACCCCTTAGACTCTGGCCTTAACAACTGGGTTGCCCTTGATAGTCTAGTTGCTTCTCAA ATCAATGGCCAGGCTGAAACCTCTAGGCAATCAGCGTGCTTCCCCAATGACCCCACCATGACTTATTGTACCCCTACTGATCTTCATCATGATCTCCAAT TCCCAACCCTACGATCATCATTTTCGTTTCCATCAAACAGATCTTACCATGAAACTCAAGATTATAACAGTGAAATCGACCTCTGGAATTTTTCCAGTAG ATCATCGTCCGACCCACAATGGCACTTGCCAAACACTAGTGTATAG
AA sequence Show only first row Show all	>Potri.002G178700.1 pacid=42777545 polypeptide=Potri.002G178700.1.p locus=Potri.002G178700 ID=Potri.002G178700.1.v4.1 annot-version=v4.1 MTENMSISVNGQSQVPPGFRFHPTEEELLDYYLRKKVSYEKIDLEVIRDVDLNKLEPWDIQERCKIGTAPQNDWYFFSHKDKKYPAGTRTNRATAAGFWK ATGRDKVIYGTGKRVGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNPSETNVSNVMGEAAQEDGWVVCRIFKKKNLNKTLDRAMSSSPITADTRNQTLSS CNEGSLDQMLHYMGSTCKEENEADNSARYLWPIDTAINHVHHDNRFMELPSLESPNSTSSLNFYQSMITENEGSITNQVSYPLDSGLNNWVALDSLVASQ INGQAETSRQSACFPNDPTMTYCTPTDLHHDLQFPTLRSSFSFPSNRSYHETQDYNSEIDLWNFSSRSSSDPQWHLPNTSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Potri.002G178700 [exp]	0	1
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.005G116800 [exp]	2.44	0.8711
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	3.74	0.8901	Pt-CIP7.1
AT4G22560			unknown protein		Potri.001G121600 [exp]	4.69	0.8798
AT3G08760		ATSIK	Protein kinase superfamily pro...		Potri.006G108200 [exp]	6.32	0.8001
AT2G35680			Phosphotyrosine protein phosph...		Potri.014G045500 [exp]	9.16	0.8396
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Potri.001G267300 [exp]	11.40	0.8301
AT3G12020			P-loop containing nucleoside t...		Potri.006G194900 [exp]	12.96	0.8296
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	13.41	0.8198	GLP10.2
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053200 [exp]	13.85	0.8253
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.001G403700 [exp]	16.97	0.8380	Pt-CIP7.2

Compare expression of checked genes

Potri.002G178700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.