Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61920 142 / 6e-43 unknown protein AT1G64700 122 / 1e-34 unknown protein AT5G03890 43 / 3e-05 unknown protein AT4G10910 39 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104900 [exp] 273 / 3e-94 AT3G61920 130 / 4e-38 unknown protein Potri.011G153000 [exp] 179 / 7e-57 AT1G64700 160 / 1e-49 unknown protein Potri.001G448500 [exp] 172 / 3e-54 AT1G64700 154 / 3e-47 unknown protein Potri.001G089000 [exp] 84 / 6e-20 AT3G61920 81 / 5e-19 unknown protein Potri.016G079700 [exp] 44 / 1e-05 AT3G10120 114 / 1e-32 unknown protein Potri.006G213100 [exp] 43 / 3e-05 AT3G10120 122 / 9e-36 unknown protein Potri.015G005700 [exp] 43 / 3e-05 AT5G03890 49 / 2e-07 unknown protein Potri.018G143700 [exp] 40 / 0.0003 AT5G66580 44 / 7e-06 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001663 [exp] 111 / 4e-30 AT1G64700 138 / 1e-40 unknown protein Lus10008274 [exp] 108 / 4e-29 AT1G64700 118 / 9e-33 unknown protein Lus10030204 [exp] 73 / 6e-16 AT3G61920 59 / 4e-11 unknown protein Lus10002686 [exp] 70 / 9e-16 AT3G61920 57 / 2e-11 unknown protein Lus10017341 [exp] 57 / 9e-11 AT1G64700 56 / 2e-10 unknown protein Lus10023060 [exp] 56 / 1e-09 AT3G61920 73 / 4e-16 unknown protein Lus10032411 [exp] 56 / 2e-09 AT3G61920 73 / 4e-16 unknown protein Lus10003193 [exp] 53 / 1e-08 AT3G61920 67 / 4e-14 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.002G178900.1 pacid=42777337 polypeptide=Potri.002G178900.1.p locus=Potri.002G178900 ID=Potri.002G178900.1.v4.1 annot-version=v4.1 ATGGGGAATTGTGTGTTCAAGGGGTTTCGCTTAGAAGTAGAAGAAATGATAAAAGTTGTGACAACAAATGGTGGTATCATGGAGCTGTACGCACCCATCA CAGCAGAGTGCATAACCAACGAGTTTCCTGGCCACGCCATCTACCGTAGCCGTGACCTCTTCTCTAAACCTCTCCTCCACAACGAAGAACTCCACGTTGG CCAACTCTACCACCTCCTCCCTATAAATACCAGCAGTATCGCATTGAACAATACCCGAAACAACAACAATACCAAAAATCATCTGTCTTCATCTACTTCA TCATCCAAAGTTACTCCTTATCGCATGTCGTTTGATAACCAAAGGATGTTGAAGCGATCATCAACAGAAGCTGAGGTGTTTCCTAGGTATAATAGCACAG GGGTTTGGAAGGTTAAGCTGGTGATAAGCCCCGAGCAATTGGCAGAGATACTGGCACAAGAGGCACGGACTGAGGAGTTGATAGAGAGTGTGAGGACTGT GGCTAAGTGTGGAAATGGGGTCTCTTCTTCAGTTGCTAATTCTGATCAATCAAGTTTGTCTAGTAGCTGGAAAGGATTGTCGGATCAGAAGTATGGTGTG GATATTTAG
AA sequence Show only first row Show all	>Potri.002G178900.1 pacid=42777337 polypeptide=Potri.002G178900.1.p locus=Potri.002G178900 ID=Potri.002G178900.1.v4.1 annot-version=v4.1 MGNCVFKGFRLEVEEMIKVVTTNGGIMELYAPITAECITNEFPGHAIYRSRDLFSKPLLHNEELHVGQLYHLLPINTSSIALNNTRNNNNTKNHLSSSTS SSKVTPYRMSFDNQRMLKRSSTEAEVFPRYNSTGVWKVKLVISPEQLAEILAQEARTEELIESVRTVAKCGNGVSSSVANSDQSSLSSSWKGLSDQKYGV DI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61920			unknown protein		Potri.002G178900 [exp]	0	1
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.007G036400 [exp]	1.00	0.8651	Pt-OBP1.1
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.004G079100 [exp]	4.89	0.8008
AT5G08335		ATICMTB, ATSTE1...	ARABIDOPSIS THALIANA ISOPRENYL...		Potri.007G074500 [exp]	5.09	0.7852
AT5G59350			unknown protein		Potri.010G206100 [exp]	7.34	0.8256
AT1G75060			unknown protein		Potri.014G041200 [exp]	10.00	0.8027
AT1G45207			Remorin family protein (.2)		Potri.014G027900 [exp]	11.48	0.8170
AT1G13380			Protein of unknown function (D...		Potri.008G120900 [exp]	14.00	0.7987
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	14.14	0.7757	Pt-NPGR2.1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.001G273700 [exp]	15.55	0.7903
AT3G18280			Bifunctional inhibitor/lipid-t...		Potri.012G054300 [exp]	16.73	0.7531

Compare expression of checked genes

Potri.002G178900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.