Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05600 649 / 0 EMB3101 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G74580 187 / 1e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 178 / 4e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16420 179 / 6e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G09060 166 / 1e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G20090 166 / 3e-44 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 166 / 3e-44 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 164 / 2e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 162 / 5e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G30290 160 / 5e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G057900 [exp] 186 / 8e-53 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 184 / 1e-50 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 180 / 1e-49 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075900 [exp] 176 / 8e-48 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G154800 [exp] 174 / 3e-47 AT4G20090 816 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G031600 [exp] 168 / 5e-46 AT5G16420 707 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G015900 [exp] 167 / 2e-44 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G108500 [exp] 162 / 2e-44 AT1G53330 483 / 1e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 162 / 2e-43 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030200 [exp] 657 / 0 AT1G05600 580 / 0.0 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005989 [exp] 187 / 8e-53 AT5G16420 656 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10039056 [exp] 179 / 1e-48 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015397 [exp] 167 / 4e-46 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 167 / 1e-45 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002681 [exp] 152 / 6e-44 AT1G05600 141 / 1e-40 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10036238 [exp] 164 / 1e-43 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009661 [exp] 160 / 1e-43 AT3G48810 440 / 3e-149 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038377 [exp] 159 / 6e-42 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002682 [exp] 145 / 1e-41 AT1G05600 129 / 3e-36 EMBRYO DEFECTIVE 3101, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G179300.1 pacid=42779853 polypeptide=Potri.002G179300.1.p locus=Potri.002G179300 ID=Potri.002G179300.1.v4.1 annot-version=v4.1 ATGAGTATAAGGTGGCCTAGGCTTCTAACACCAACACAACTCTCTCAAATTTTGAGGAGCCAGAAAAATCCATTAACGGCGTTGCAGATTTTCAAGGATG CAAAAGACAAATACCCCAGCTATCACCACAATGGTCCTGTGTATGCCACCATGATCAGCATCCTTGGAAACTCAGACCGAATTGCTGAGATGAAAGAGGT TATTGATCAGATGCGCGACGATTCCTGTGAGTGCAAAGATTCAGTCTTTGTTACTGCAATCAAGACCTATGCGAGTGCAGGCCAAATAAGTGAAGCTGTC TCACTCTTCAAGAATATTCCAAAATTCAACTGTGTAAATTGGACTGAATCTTTCAATACCCTTTTGCAAATATTGGTGAAGGAATCAAAACTTGAAACAG CTCACCGTTTTTTCTTGGAGAACTCATGTGGGTGGGAAGTGAAATCTCGCATTCGTGCCTTAAACCTGCTATTGGATGTTCTTTGCCAACGTAATCGCTC TGACCTTGCATTGCAAATCTTCCAAGAGATGGATTATCAGGGTTGCTATCCGAATAGGGATAGTTATCGAATTCTTATGAGGGGATTGTGTGAAGATGGA AGGCTAAACGAGGCCACACATTTGTTATACTCAATGTTTTGGAGGATCTCTCAAAAGGGAAGCGGAGAGGATATCGTAGTATATAGAACCCTTTTGGATG CTCTATGTGATAATGGGCAGGTTGAAGAAGCTATGGAAATCCTTGGTAAGATATTAAGGAAGGGGCTGAAGGCACCTAAGCGATACCGCCACCGTCTTGA TCTTAGTCAGTGCAATAATTGTGAAGATATAGAAGCCACAAAGCTTTTGATTAATGAAGCTCTAATCAGAGGCGGAGTTCCCAGTTTGGCTAGTTATACA GCGATGGCTGTTGATCTTTACTGTGAAGGCAAGACTGGTCAGGCTGATAAAGTGCTAGATGAAACTCAAGAGAGAGGCTATAGGCCATCACTTAGGACTT ATGAAGCGAAGGTCACCGCATTGTGTAGACAAGGTAGGAGTGGTGAAGCCATTAATGTAATCGAAAGGGAGATGGTAGAGAGAAATAGTGTTCCAAATGT AAGATTGTATAATGTCTTATTGAAAGGCTTATGTGATGCAGGGAATTCAGCAATCGCTGTTAGTTATTTGAAAAGGATGGCTAAGCAGGTGGGTTGTGTT GCCAATCAGGAAACTTACGGCATTTTAGTGGATGGGCTGTGTCGAGATGGTAGGTTTGTTGAAGCAAGTAAGGTTTTGGAAGAGATGTTAATTAAATCAT ATTGGCCACCAGCTGATACCTACAATATCCTTATAAGGGGTCTTTCCTCCATGGGCAGGCAATATGAAGCTGTTATATGGTTAGAGGAGATGGTCAGCCA GGATAAGCTACCAGAACTTTATGTGTGGAGATCCTTGGTAACTTCTGTTTGTTGTAATATGGTTGCTGTAGATGTTAGCTGTGAGACATTTAATCAGCTT ATCAGTTCATAG
AA sequence Show only first row Show all	>Potri.002G179300.1 pacid=42779853 polypeptide=Potri.002G179300.1.p locus=Potri.002G179300 ID=Potri.002G179300.1.v4.1 annot-version=v4.1 MSIRWPRLLTPTQLSQILRSQKNPLTALQIFKDAKDKYPSYHHNGPVYATMISILGNSDRIAEMKEVIDQMRDDSCECKDSVFVTAIKTYASAGQISEAV SLFKNIPKFNCVNWTESFNTLLQILVKESKLETAHRFFLENSCGWEVKSRIRALNLLLDVLCQRNRSDLALQIFQEMDYQGCYPNRDSYRILMRGLCEDG RLNEATHLLYSMFWRISQKGSGEDIVVYRTLLDALCDNGQVEEAMEILGKILRKGLKAPKRYRHRLDLSQCNNCEDIEATKLLINEALIRGGVPSLASYT AMAVDLYCEGKTGQADKVLDETQERGYRPSLRTYEAKVTALCRQGRSGEAINVIEREMVERNSVPNVRLYNVLLKGLCDAGNSAIAVSYLKRMAKQVGCV ANQETYGILVDGLCRDGRFVEASKVLEEMLIKSYWPPADTYNILIRGLSSMGRQYEAVIWLEEMVSQDKLPELYVWRSLVTSVCCNMVAVDVSCETFNQL ISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Potri.002G179300 [exp]	0	1
AT5G13970			unknown protein		Potri.014G143800 [exp]	2.82	0.8549
AT4G31980			unknown protein		Potri.003G209500 [exp]	3.74	0.8765
AT1G11320			unknown protein		Potri.005G242900 [exp]	4.24	0.8422
AT5G01260			Carbohydrate-binding-like fold...		Potri.006G099200 [exp]	7.74	0.8492
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	9.38	0.8504
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.001G074400 [exp]	11.22	0.8432	ENOD8.2
AT1G77360			Tetratricopeptide repeat (TPR)...		Potri.017G126600 [exp]	14.83	0.8409
AT1G80290			Nucleotide-diphospho-sugar tra...		Potri.006G278400 [exp]	15.49	0.7923
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	18.97	0.8420
AT1G67340			HCP-like superfamily protein w...		Potri.001G056800 [exp]	19.62	0.7751

Compare expression of checked genes

Potri.002G179300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.