Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01400 1210 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002677 [exp] 1273 / 0 AT4G01400 1222 / 0.0 unknown protein Lus10030195 [exp] 1268 / 0 AT4G01400 1221 / 0.0 unknown protein Lus10012607 [exp] 274 / 3e-85 AT4G01400 279 / 6e-88 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04437 [poplar] [flax] RINT1_TIP1 RINT-1 / TIP-1 family CL0294 [poplar] [flax] Sec10 PF08318 [poplar] [flax] COG4 COG4 transport protein
Representative CDS sequence Show only first row Show all	>Potri.002G179600.1 pacid=42778239 polypeptide=Potri.002G179600.1.p locus=Potri.002G179600 ID=Potri.002G179600.1.v4.1 annot-version=v4.1 ATGAAAATGGTAGCAACCCCAAATGGAGCAGTCACGAAATCCCCAAAACCCCAACCACAACCACTACAAGAAGAACCCCAACAAGAAGACGAAACCACCC TCAACTCTCCCTCTATTAAATTCGGCACCCCTGAAGCCTTAGACCACGTTCGCAACCTAACCGACGTAGGCGCCATGACTCGTCTCCTCCACGAATGCAT AGCCTACCAACGCGGTCTCGACCTCAACCTCGATACTCTTTTATCCCAACGTTCCGATCTCGACAAGAATCTCCATCACCTCCAAAAATCCGCTGATGTT CTCGAGATTGTCAAGGCCGATTTCGACCACATGCACTCCAATGTCCGCTCCACCTGCGATTTAGCAGATCACGTGAGTGCCAAAGTGCGTGAGCTCGATC TTGCTCAGTCGCGTGTTAATTCCACCCTCTTGCGTATTGATGCGATTGTTGAGAGAGGGAATTGTATTGAAGGAGTGAAGAATGCGCTTGAAAAAGAGGA TTATGAGTCTGCTGCCAAGTATGTGCAGACATTTTTGCAGATTGATGCAAAGTATAAAGATTCTGGGTCGGATCAGAGAGAGCAGTTGTTGGCGTCGAAG AGAACGCTCGAAGGAATTGTGGGCAAGAAGTTGTCCGCTGCGGTGGATTCCAGGGATCATTCGACGATTTTAAGGTTTATCAGGCTTTTTTCGCCTCTAG GATTGGAAGAAGAGGGCTTGCAGGTTTATGTTGGATATTTAAAGAAAGTGATTTCGATGCGATCTAGGCTTGAGTTTGAGAATTTAGTGGAGTTAATGGA ACAGAGTTATAATAATAGTAATGTTAGTAGTAATGTTAATTTTGTTGGGGGTTTGACGAATTTGTTTAAGGATATTGTTTTGGCTATTGAAGAAAATGAT GAGATATTGAGGGGTTTGTGTGGTGAAGATGGGATTGTTTATGCAATTTGCGAATTACAAGAGGAGTGTGATTCGAGGGGTTCTTTGATTTTGAAGAAAT ATATGGAGTATAGGAAACTGGGGAAGTTGGCGTCGGAGATTAATGCACAGAATAAGAATTTACTTGCTGTTGGTGCACCGGAAGGGCCAGACCCAAGAGA GATTGAGTTGTATTTAGAAGAGATATTGTCATTGATGCAATTAGGTGAGGATTATACAGAATTCATGGTTTCGAAGATTAAAGGGTTGAGCTCTGTTGAT CCCGAGTTGGTTCCACGAGCTACTAAATCATTTAGGAGTGGGAGTTTTAGTAGAGTAGTTCAGGAGATCACTGGGTTTTATGTGATTTTAGAGGGATTCT TTATGGTTGAAAATGTAAGGAAAGCTATTAAGATTGATGAGCATGTGCCTGATAGCCTTACAACGTCTACTGTTGACGATGTGTTCTATGTTCTTCAAAG TTGCTTGAGAAGGGCAATATCAACTTCAAACGTTAATTCTGTGATTGCAGTCTTGAGTGCTGCAGGTAGTTTGTTAAGTAATGAATACCATGAAGCTTTG CAACAGAAAATGAGAGAACTAAACCTTGGTGCAAAGCTGTTTTTGGGTGGTGTTGGTGTACAAAAGACTGGGACTGAGTTTGCCACTGCATTGAATAATA TGGATGTGAGTGGCGAGTATGTCTTGAAGTTGAAGCATGAGATTGAAGAGCAATGTGCTGAGGCATTCCCTGCAACAGCAGATAGAGAAAGGGTGAAATC TTGTTTGTCTGAGTTGGGTGATGTGAGCAGTACTTTCAAGCAAGCCCTGAATGCTGGCATGGAACAACTAGTGGCAACCGTTACACCTCGAATCCGTCCA GTATTAGATAGTGTAGCAACCATCAGTTATGAATTATCTGAGGCTGAATATGCAGATAATGAGGTGAATGACCCATGGGTCCAGAGGCTTCTCCACTCTG TTGAGACAAATGTATCGTGGCTCCAGCCTCTAATGACTGCCAACAATTATGATTCATTTGTACATTTGGTCATTGACTTCATTGTGAAGAGGCTCGAAGT GATCATGATGCAGAAGAGGTTCAGTCAGCTTGGAGGCCTTCAGCTTGACAGGGATGTGAGGGCATTGGTAAGCCATTTCTCTAGCATGACTCAGAGGACT GTGAGAGACAAGTTTGCTCGTCTCACTCAAATGGCAACTATTCTCAACTTAGAAAAGGTATCTGAGATTCTAGATTTCTGGGGTGAGAACTCTGGACCTA TGACCTGGAGACTAACCCCTGCAGAGGTTAGGCGAGTGTTGGGTCTAAGGGTTGATTTTAAACCTGAAGCTATTGCTGCTTTGAAGTTGTGA
AA sequence Show only first row Show all	>Potri.002G179600.1 pacid=42778239 polypeptide=Potri.002G179600.1.p locus=Potri.002G179600 ID=Potri.002G179600.1.v4.1 annot-version=v4.1 MKMVATPNGAVTKSPKPQPQPLQEEPQQEDETTLNSPSIKFGTPEALDHVRNLTDVGAMTRLLHECIAYQRGLDLNLDTLLSQRSDLDKNLHHLQKSADV LEIVKADFDHMHSNVRSTCDLADHVSAKVRELDLAQSRVNSTLLRIDAIVERGNCIEGVKNALEKEDYESAAKYVQTFLQIDAKYKDSGSDQREQLLASK RTLEGIVGKKLSAAVDSRDHSTILRFIRLFSPLGLEEEGLQVYVGYLKKVISMRSRLEFENLVELMEQSYNNSNVSSNVNFVGGLTNLFKDIVLAIEEND EILRGLCGEDGIVYAICELQEECDSRGSLILKKYMEYRKLGKLASEINAQNKNLLAVGAPEGPDPREIELYLEEILSLMQLGEDYTEFMVSKIKGLSSVD PELVPRATKSFRSGSFSRVVQEITGFYVILEGFFMVENVRKAIKIDEHVPDSLTTSTVDDVFYVLQSCLRRAISTSNVNSVIAVLSAAGSLLSNEYHEAL QQKMRELNLGAKLFLGGVGVQKTGTEFATALNNMDVSGEYVLKLKHEIEEQCAEAFPATADRERVKSCLSELGDVSSTFKQALNAGMEQLVATVTPRIRP VLDSVATISYELSEAEYADNEVNDPWVQRLLHSVETNVSWLQPLMTANNYDSFVHLVIDFIVKRLEVIMMQKRFSQLGGLQLDRDVRALVSHFSSMTQRT VRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRVDFKPEAIAALKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01400			unknown protein		Potri.002G179600 [exp]	0	1
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Potri.016G054200 [exp]	3.60	0.9129	Pt-AGK2.2
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	4.89	0.9352
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.002G222400 [exp]	5.19	0.9369
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.004G111000 [exp]	6.00	0.9144
AT5G12260			unknown protein		Potri.001G272400 [exp]	6.70	0.9185
AT5G64970			Mitochondrial substrate carrie...		Potri.007G093300 [exp]	6.70	0.9122
AT5G44860			unknown protein		Potri.012G125800 [exp]	8.88	0.8789
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.006G087500 [exp]	11.83	0.9284	LAC110c
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.014G161600 [exp]	12.32	0.9110
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.005G100800 [exp]	12.48	0.9063

Compare expression of checked genes

Potri.002G179600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.