Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24470 268 / 4e-80 APRR5 pseudo-response regulator 5 (.1) AT2G46790 249 / 6e-75 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 192 / 8e-54 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 175 / 5e-46 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G61380 117 / 2e-27 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT3G16857 100 / 1e-21 GARP ARR1 response regulator 1 (.1.2) AT2G25180 99 / 2e-21 GARP ARR12 response regulator 12 (.1) AT4G31920 97 / 5e-21 GARP ARR10 response regulator 10 (.1) AT2G46670 89 / 2e-20 CCT motif family protein (.1) AT4G16110 95 / 5e-20 GARP ARR2 response regulator 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106000 [exp] 994 / 0 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.015G002300 [exp] 434 / 2e-143 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 432 / 2e-142 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.008G046200 [exp] 196 / 4e-53 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G215200 [exp] 195 / 6e-53 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.015G061900 [exp] 122 / 4e-29 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.018G111300 [exp] 103 / 9e-23 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 102 / 3e-22 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G135500 [exp] 99 / 2e-21 AT4G16110 370 / 3e-119 response regulator 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023230 [exp] 332 / 7e-104 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10008878 [exp] 328 / 2e-102 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1) Lus10032934 [exp] 246 / 3e-72 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10015571 [exp] 244 / 2e-71 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10008879 [exp] 229 / 2e-65 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023229 [exp] 220 / 9e-64 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10014018 [exp] 172 / 8e-45 AT5G02810 452 / 6e-148 pseudo-response regulator 7 (.1) Lus10000566 [exp] 121 / 1e-28 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 121 / 1e-28 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 120 / 2e-28 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.002G179800.1 pacid=42779286 polypeptide=Potri.002G179800.1.p locus=Potri.002G179800 ID=Potri.002G179800.1.v4.1 annot-version=v4.1 ATGGGTAAGGTGGTGTTGAGTAGCAGTAGTGAAGAGGCGGGGGGGATGGTGGTGGAGTTAGAGACAGAGAAGAAGGATATTGGATCGTCGGAGGTGGTTC GATGGGAAAAGTTTCTACCAAAGATGGTGCTCAGGGTTCTTTTGGTCGAAGCGGATGATTCTACTCGTCAGATTATTGTTGCTCTTCTCCGAAAATGCGG TTACAGAGTTTCTGCTGTTCCTGATGGATTAATGGCGTGGGAGACTTTGAAGGAGAGACCCCATAGCATAGATCTCATATTAACTGAAGTGGAGTTGCCA TTAATATCGGGATATGCGTTTCTTGCTTTGGTCATGGAGCATGATGTTTGCAAAAACATTCCTGTCATAATGATGTCTTCACACGATTCAATTAGTGTGG TTCTGAAGTGCATGTTAAAAGGATCAGCTGACTTTCTCGTTAAGCCTGTTCGGAAGAATGAATTGAGGAACTTGTGGCAGCATGTTTGGAGAAGGCAAAC TCAAACTGCTGGAAAAATCCCTCGAAACTCGAATAGAGTTGAGGCCTCATCTGAAAACAACGCAGCTTCGAGTGATTTTGCGACGTCTTTGCAGAAAAAT AAGGATTGCAGCGAGAAAGGGAGTGATGCCCAAAGCTCTTGTACGACCCCTTGCTTGGAAGCTGAGAGTGCTCACATGCAAAATATACAGGGACTTTCAT ATCTGAAGTATAGGAGTGCTTCAAACTTGAGCGATGCAGATAATGAGAAGTATGAAGATTATGCCAAATTAAATAAAAGCCCAGTAAATCCTGAGAGCAA GACCGGAGTATTTGTAGCAGAAAGGTCAAACAGGACGAGACCTGACAGAGAACCGTACCATGGAGCTTATAATCCAACTGCTTCGAGACTGGTAGAGGAG CATGCTTGTGCTAAGTCAGCGATTCATGATGAGAACTCGAGACCAGAAAATGATAGGGAACATGCTAATAGCTCCTTTGGCCACGATGATGTACTTGCTG AAACCTCAAGTGGAGCCATTGACTTGATTGGTTCCTTCAATAATCAACCAAAGCACACATATGCATACTCTAGTTTACATGATGCGACAAACAAGTTTGA ATTCCCTCCACTACTTGAACTCTCTCTCAGAAGATTGTATCCCAGTAGCTCAAAGAACCAAGGGCTAGATGAAAGACATGCATTGAACCATTCCAATTCC TCAGCCTTCTCACTGTACAATAGTAAGACACTGCAATCCCTTTTTCCAACATCTGCCAGTAATGGCTCAGATTCCAAGGAAGAAGCCAGTAAGTCTCCTG ATCCGTCATCCAATCAACTTGCTCAAAATGTTGGTACTCTTTCTCAGATACACGATGCCTCTTTGAGTGGCAATCAAGAAATTATGACCACTCCGGTCAT TGGCCAGTCTGGGAAGGTGGAATTAGCACATCCAAGCCCTCAACTTGGATTGATTCCTGTCTTAGGTACAAGGCTTGACAATATCTCTACCGGATGTGGT CATGTTTTCTCCCCTCTATGTTATACACAATCAAATGCAGCATGGAATCCCAATCTTGCGGGGCGGCAACAGTCTCCATTTCCTACAACTGCCTCAGTTC ATTCAAATCCTGAAGTTCTTGATTCCAAGCAAAACCACAAGTGTTATGTTGACCAAAATGATCTTCAGCAGAACAATAGGGAACCTGTGGATGAAATGAG ACATGATTCACCTGCTGCTGGTCAGAGTACTAGTAGTAGTTTATGTAACCGTGTTGCCAATAATAATAGTAGCAGTGCTTATGAAAGCTTTGGCAGTGGA AACGATGTAAATGCCTCTTCGGTTGGGACAGCTGAGAAGTCCATGGCTCAAGAGAACTTGAATAATGGGGGTAACTTCAACCATGATGGTTTTGGAGGGA GCGATTCCTATCGCTCCAGCCAAAGAGAAGCTGCTCTAACAAAGTTCCGCTTGAAGCGGAAAGATCGATGCTATGAGAAAAGGGTTCGATACCAAAGTCG GAAAAGACTGGCAGAGCAACGTCCTCGGGTGAAAGGTCAGTTTGTTCGTCAAGCGCAAAATGATTGCCCAGTTGCTAATGGTTGA
AA sequence Show only first row Show all	>Potri.002G179800.1 pacid=42779286 polypeptide=Potri.002G179800.1.p locus=Potri.002G179800 ID=Potri.002G179800.1.v4.1 annot-version=v4.1 MGKVVLSSSSEEAGGMVVELETEKKDIGSSEVVRWEKFLPKMVLRVLLVEADDSTRQIIVALLRKCGYRVSAVPDGLMAWETLKERPHSIDLILTEVELP LISGYAFLALVMEHDVCKNIPVIMMSSHDSISVVLKCMLKGSADFLVKPVRKNELRNLWQHVWRRQTQTAGKIPRNSNRVEASSENNAASSDFATSLQKN KDCSEKGSDAQSSCTTPCLEAESAHMQNIQGLSYLKYRSASNLSDADNEKYEDYAKLNKSPVNPESKTGVFVAERSNRTRPDREPYHGAYNPTASRLVEE HACAKSAIHDENSRPENDREHANSSFGHDDVLAETSSGAIDLIGSFNNQPKHTYAYSSLHDATNKFEFPPLLELSLRRLYPSSSKNQGLDERHALNHSNS SAFSLYNSKTLQSLFPTSASNGSDSKEEASKSPDPSSNQLAQNVGTLSQIHDASLSGNQEIMTTPVIGQSGKVELAHPSPQLGLIPVLGTRLDNISTGCG HVFSPLCYTQSNAAWNPNLAGRQQSPFPTTASVHSNPEVLDSKQNHKCYVDQNDLQQNNREPVDEMRHDSPAAGQSTSSSLCNRVANNNSSSAYESFGSG NDVNASSVGTAEKSMAQENLNNGGNFNHDGFGGSDSYRSSQREAALTKFRLKRKDRCYEKRVRYQSRKRLAEQRPRVKGQFVRQAQNDCPVANG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24470		APRR5	pseudo-response regulator 5 (....		Potri.002G179800 [exp]	0	1
AT2G36950			Heavy metal transport/detoxifi...		Potri.016G093100 [exp]	3.31	0.9301
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151600 [exp]	4.24	0.9285
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.008G099100 [exp]	4.79	0.8986	Pt-ACT11.13
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.004G152300 [exp]	7.74	0.9240
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.016G115500 [exp]	7.74	0.9258	CAX3.2
					Potri.019G120200 [exp]	9.69	0.8862
AT3G19900			unknown protein		Potri.010G169700 [exp]	10.00	0.9287
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.005G225000 [exp]	10.77	0.8954
AT4G35040	bZIP	bZIP19	Basic-leucine zipper (bZIP) tr...		Potri.009G134900 [exp]	15.96	0.9037
AT1G18265			Protein of unknown function, D...		Potri.009G078800 [exp]	17.43	0.9072

Compare expression of checked genes

Potri.002G179800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.