Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01410 232 / 7e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44220 122 / 6e-35 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G52470 121 / 2e-34 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35960 114 / 7e-32 NHL12 NDR1/HIN1-like 12 (.1) AT3G11660 114 / 1e-31 NHL1 NDR1/HIN1-like 1 (.1) AT4G09590 112 / 5e-31 NHL22 NDR1/HIN1-like 22 (.1) AT5G22200 112 / 6e-31 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G35970 111 / 2e-30 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G53730 107 / 4e-29 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT5G06330 104 / 7e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G106100 [exp] 303 / 6e-106 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G019600 [exp] 122 / 1e-34 AT3G44220 242 / 8e-82 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.005G088000 [exp] 120 / 5e-34 AT3G44220 194 / 5e-63 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204200 [exp] 117 / 1e-32 AT3G11660 267 / 1e-91 NDR1/HIN1-like 1 (.1) Potri.016G071500 [exp] 112 / 6e-31 AT3G11660 272 / 1e-93 NDR1/HIN1-like 1 (.1) Potri.012G006000 [exp] 105 / 2e-28 AT5G53730 225 / 4e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.015G002400 [exp] 102 / 6e-27 AT5G53730 227 / 7e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G039400 [exp] 91 / 2e-22 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G204300 [exp] 90 / 2e-22 AT2G35980 208 / 6e-68 YELLOW-LEAF-SPECIFIC GENE 9, ARABIDOPSIS NDR1/HIN1-LIKE 10, Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010103 [exp] 226 / 1e-75 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10030193 [exp] 216 / 5e-71 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021286 [exp] 123 / 4e-35 AT3G52470 298 / 1e-103 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016960 [exp] 120 / 5e-34 AT3G11660 295 / 1e-102 NDR1/HIN1-like 1 (.1) Lus10043410 [exp] 115 / 5e-32 AT3G44220 207 / 6e-68 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10004202 [exp] 111 / 2e-30 AT3G11660 257 / 8e-88 NDR1/HIN1-like 1 (.1) Lus10034175 [exp] 111 / 2e-30 AT3G44220 210 / 7e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10029406 [exp] 109 / 7e-30 AT3G11660 252 / 7e-86 NDR1/HIN1-like 1 (.1) Lus10000157 [exp] 106 / 1e-28 AT3G52470 164 / 3e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10013327 [exp] 104 / 1e-27 AT3G11660 147 / 2e-44 NDR1/HIN1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.002G180000.1 pacid=42778284 polypeptide=Potri.002G180000.1.p locus=Potri.002G180000 ID=Potri.002G180000.1.v4.1 annot-version=v4.1 ATGGCATCACCACCAAGAAACACGCTCCGTGCTCTCTGCACATTGATCACTATCTTCCTTCTCTTAGCAGGTCTTGCAGTTCTAATAGTCTGGTTAATTT ACAGACCTCACAAGCCCCAGTTCACTGTAGTTGGGGCAGCTATATATGACCTTAACACCACATGCCCACCTTTCATTTCCACCTCCATGCAGTTCTCTCT TGTCACTAGAAACCCCAACAGGAGGGTCTCGATCATGTATGATAAACTCACTACCTATGTATCATACAGGAACCAAGCTATAACTCCTTCACTGGCATTG CCACCACTTTATCACGCGACAAAGAGCACGGTGGCCCTGTCTCCGGTGCTTGGTGGGGCAGGGGTGCCGGTTTCAGTGGAAGTTTCAAACGGGTTGGTGA TGGATGAGGCATATGGGGTTGTGGCGCTGAGTGTGGTGTTGTTGGGGCGGCTAAGGTGGAAGGCTGGGGCTATAAAGACTCTGAGATATGGAGTTTATGT GAAGTGTGATGTCTGGGTGGGTTTGAAGAAGGGCTTCGTAGGGCAGGTGCCTTTGCTTGGGTCTCCAAAGTGTAAAGTCGATATATGA
AA sequence Show only first row Show all	>Potri.002G180000.1 pacid=42778284 polypeptide=Potri.002G180000.1.p locus=Potri.002G180000 ID=Potri.002G180000.1.v4.1 annot-version=v4.1 MASPPRNTLRALCTLITIFLLLAGLAVLIVWLIYRPHKPQFTVVGAAIYDLNTTCPPFISTSMQFSLVTRNPNRRVSIMYDKLTTYVSYRNQAITPSLAL PPLYHATKSTVALSPVLGGAGVPVSVEVSNGLVMDEAYGVVALSVVLLGRLRWKAGAIKTLRYGVYVKCDVWVGLKKGFVGQVPLLGSPKCKVDI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G01410			Late embryogenesis abundant (L...		Potri.002G180000 [exp]	0	1
					Potri.002G250900 [exp]	2.00	0.9408
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G142100 [exp]	4.24	0.9317	Pt-ARF1.5
AT2G18196			Heavy metal transport/detoxifi...		Potri.011G149500 [exp]	5.74	0.9258
					Potri.012G086200 [exp]	8.00	0.9160
					Potri.008G114101 [exp]	8.66	0.9145
AT3G17880		ATHIP2, ATTDX	HSC-70 INTERACTING PROTEIN, AR...		Potri.012G045000 [exp]	11.40	0.8332	Pt-ATTDX.1
					Potri.004G226200 [exp]	13.49	0.8810
AT1G22030			unknown protein		Potri.001G211900 [exp]	14.24	0.9044
					Potri.002G022100 [exp]	14.83	0.9002
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	15.87	0.8839

Compare expression of checked genes

Potri.002G180000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.