Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RCOMT1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54160 392 / 2e-136 ATOMT1 O-methyltransferase 1 (.1) AT1G77520 300 / 2e-100 O-methyltransferase family protein (.1) AT1G33030 295 / 1e-98 O-methyltransferase family protein (.1) AT1G77530 273 / 1e-89 O-methyltransferase family protein (.1) AT1G21100 272 / 3e-89 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1) AT1G21130 271 / 9e-89 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G51990 270 / 2e-88 O-methyltransferase family protein (.1.2) AT1G21120 269 / 3e-88 IGMT2 indole glucosinolate O-methyltransferase 2, O-methyltransferase family protein (.1) AT5G53810 268 / 8e-88 O-methyltransferase family protein (.1) AT1G21110 268 / 1e-87 IGMT3 indole glucosinolate O-methyltransferase 3, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G180600 [exp] 680 / 0 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 680 / 0 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 680 / 0 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 679 / 0 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 596 / 0 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.012G006400 [exp] 401 / 5e-140 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 394 / 2e-137 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106500 [exp] 362 / 2e-124 AT5G54160 349 / 8e-119 O-methyltransferase 1 (.1) Potri.011G150500 [exp] 349 / 7e-120 AT5G54160 364 / 2e-125 O-methyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005133 [exp] 449 / 7e-159 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002669 [exp] 433 / 1e-152 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10002667 [exp] 428 / 1e-150 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10006146 [exp] 427 / 2e-150 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10032929 [exp] 380 / 1e-131 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 378 / 8e-131 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10009442 [exp] 284 / 5e-94 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10030188 [exp] 275 / 3e-92 AT5G54160 213 / 9e-68 O-methyltransferase 1 (.1) Lus10014825 [exp] 246 / 1e-79 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1) Lus10014400 [exp] 237 / 1e-75 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00891 [poplar] [flax] Methyltransf_2 O-methyltransferase domain CL0123 [poplar] [flax] HTH PF08100 [poplar] [flax] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.002G180700.1 pacid=42778804 polypeptide=Potri.002G180700.1.p locus=Potri.002G180700 ID=Potri.002G180700.1.v4.1 annot-version=v4.1 ATGCAACTAGCTTTGAGCTCAGTGCTACCCATGACTCTACACACGGCGATTCAGCTTGGCATCTTTGAGATCATAGCCAAAGCAGGTCCAGATGTCAAAC TCTCTGCTGCAGATATCGCAGCCAAGTTGCCAACAGATAACCCCGATACACCAAAGATGCTGGACCGTATTCTAAGGCTCTTGGCTAGCCACCAAGTGCT TTGTTGTTTTGTCGATGGCTCGGAGAGGTTCTACAGTCTGGCTCCTGTGTCCATGTACTTCGTGCGCAACCAAAATGGAGTTTCTTTGGCCCCCTTCATG GCCTTGATTCAAGAAAACGTCGTCTTACAGAGCTGGTCTCAACTAAAAGATGCAGTTCTTGAAGGAGGAGTTGCGTTTCACAGAGTCCATGGAGTACATG GCTTTGAGTACAATGGCTTGGACCCTAAGTTCAATCAGGTATTCAACACAGCAATGTACAACCAAACCACTGTTGTAAATGGTTTTATGCTTGAGAAATA CAATGGTTTCAAGAACCTGAAACAGCTGGTTGATATTGGTGGCGGCTTGGGACACACTATGAAGGCAATAACCTCTAAATATCCCCATATCAAGGGTATC AATTTCGACTTGCCACATGTTATAGAGCATGCGCCGGCCTATCCTGGTGTGGAGCACGTGGGAGGAGATATGTTTGAAAGTGTTCCCAAAGGAGATGCCA TTTTCCTGAAGTGGATACTCCATAATTGGAGTGATGATCACTGCTTGAAGTTGTTGAAGAACTGCTACAAAGCTATTCCAGGGGATGGGAAGGTAATTGT AATGGAATCAGTTCTTCCGATCACGGCCAAGACAAGCCCTGCTGCGAAAGCGATCTCGCAACTTGATGTACTGATGATGATAACTCAAAACCCAGGAGGG AAAGAACGGACTGAAGATGAATTCATGGCCCTGGCCACTGCAGCTGGATTCCGTGGCATCAAATTTGAAACCTTTGTTTGTAATTTTTGGGTCATGGAGT TCTTCAAGTAG
AA sequence Show only first row Show all	>Potri.002G180700.1 pacid=42778804 polypeptide=Potri.002G180700.1.p locus=Potri.002G180700 ID=Potri.002G180700.1.v4.1 annot-version=v4.1 MQLALSSVLPMTLHTAIQLGIFEIIAKAGPDVKLSAADIAAKLPTDNPDTPKMLDRILRLLASHQVLCCFVDGSERFYSLAPVSMYFVRNQNGVSLAPFM ALIQENVVLQSWSQLKDAVLEGGVAFHRVHGVHGFEYNGLDPKFNQVFNTAMYNQTTVVNGFMLEKYNGFKNLKQLVDIGGGLGHTMKAITSKYPHIKGI NFDLPHVIEHAPAYPGVEHVGGDMFESVPKGDAIFLKWILHNWSDDHCLKLLKNCYKAIPGDGKVIVMESVLPITAKTSPAAKAISQLDVLMMITQNPGG KERTEDEFMALATAAGFRGIKFETFVCNFWVMEFFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180700 [exp]	0	1	RCOMT1.2
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180433 [exp]	1.41	0.9765
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180600 [exp]	2.82	0.9573	Pt-RCOMT1.7
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180466 [exp]	3.46	0.9552
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.002G180500 [exp]	4.00	0.9515
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011000 [exp]	10.24	0.7463
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.013G060000 [exp]	14.28	0.7345
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G013000 [exp]	15.42	0.7108
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	20.34	0.6704
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011300 [exp]	20.44	0.6683
					Potri.001G013101 [exp]	30.29	0.6145

Compare expression of checked genes

Potri.002G180700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.