Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61960 592 / 0 Protein kinase superfamily protein (.1.2) AT2G37840 333 / 6e-104 Protein kinase superfamily protein (.1.2) AT3G53930 318 / 2e-98 Protein kinase superfamily protein (.1.2) AT1G49180 242 / 2e-73 protein kinase family protein (.1.2) AT2G30360 181 / 5e-50 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G57630 174 / 1e-47 CIPK21, SnRK3.4 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) AT2G45490 168 / 4e-47 ATAUR3 ataurora3 (.1) AT1G30270 172 / 1e-46 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 169 / 1e-45 Ca2+regulated serine-threonine protein kinase family protein (.1) AT2G26980 165 / 6e-45 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G107000 [exp] 1068 / 0 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G092900 [exp] 331 / 3e-103 AT2G37840 874 / 0.0 Protein kinase superfamily protein (.1.2) Potri.016G104900 [exp] 328 / 3e-102 AT2G37840 850 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G007200 [exp] 268 / 9e-85 AT1G49180 353 / 1e-121 protein kinase family protein (.1.2) Potri.019G011600 [exp] 270 / 1e-84 AT1G49180 352 / 9e-121 protein kinase family protein (.1.2) Potri.019G011300 [exp] 245 / 8e-76 AT1G49180 331 / 2e-113 protein kinase family protein (.1.2) Potri.011G067600 [exp] 174 / 1e-46 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.014G104200 [exp] 171 / 1e-46 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.009G021000 [exp] 170 / 4e-46 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005135 [exp] 640 / 0 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030182 [exp] 630 / 0 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022593 [exp] 322 / 1e-99 AT2G37840 855 / 0.0 Protein kinase superfamily protein (.1.2) Lus10021493 [exp] 322 / 1e-99 AT2G37840 848 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033518 [exp] 275 / 7e-87 AT1G49180 353 / 2e-121 protein kinase family protein (.1.2) Lus10020855 [exp] 246 / 5e-74 AT1G49180 333 / 2e-111 protein kinase family protein (.1.2) Lus10020580 [exp] 174 / 4e-49 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10028115 [exp] 172 / 1e-46 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10030210 [exp] 171 / 1e-46 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10006266 [exp] 166 / 1e-46 AT2G45490 427 / 1e-152 ataurora3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.002G181000.2 pacid=42779801 polypeptide=Potri.002G181000.2.p locus=Potri.002G181000 ID=Potri.002G181000.2.v4.1 annot-version=v4.1 ATGGATCTTAACCAGACCCGTTTGATTGGTGATTATATTCTTGGCCCGATAATCGGGCGGGGATCTTTTGCTGTTGTTCGGAGGGCTAAACACCGGTCTT CGTGTTTAGAAGTTGCGGTTAAAGAAATTGACAAAAAATTACTTAGTCCAAAAGTTAGTGATAATTTGCTCAAAGAAATTTCTATTCTTAGTACTATAAA TCACCCCAACATTATCCGCCTTTTTGAGTCCTTTGAGACTGAAGATAGGATATTTCTTGTATTGGAATACTGTGATGGAGGTGATCTTGCTGGGTATATT CAACGCCATGGGAAAGTAACTGAGGCTGTAGCAAGGCACTTTATGAGGCAATTGGCTGCAGGGTTGCAAGCGCTTCAAGAAAAACATCTTATTCATAGAG ACTTAAAACCACAGAACCTACTTTTGTTATCAAATGACTTAACTCCACAATTGAAGATAGGTGATTTTGGCTTTGCAAGGTCTTTGACATCATCAGACTT GGCTGATACACTATGTGGCTCACCATTATACATGGCCCCAGAGATTATTCAGAATAAAAAGTATGATGCGAAGGCTGACTTATGGAGTGTTGGGGCAGTT TTGTTCCAGCTGGTAACTGGGAAGCCTCCATTTGATGGCAACAGCCAATATCAGCTTTTCCAGAATATTTTGACATCTACAGAGCTTAGGTTTCCACAAG GTGCGTTGGAGGAGCTCCATCCAGATTGTGTGGATCTTTGCAGAAGCCTTTTATGCCGAAACCCTGTTGAGCGATTAACATTCAAGGAGTTCTTCAATCA CAAGTTCTTTGAGGAGCCAAGGCTATTGCTGGATGCTAAATCTCCTCTACTTCCACAAATGAAATCAGTAGTTGAGCAGTTTGATGCGTCTGCTTCTAAT ACAAGGTCTCAAATGGGGCATTGCTTGCACTCAGCTAATAGAAATGCTATATTAACTAGCACATCTGAGCATGACAACATAACAATGCTGGCAAAGGTTC ATGACAGTACATCCAGAAATGACAGTGTTCATGGGATTGTGCCAAGTATTGTGCATGATAGGATGGGGAGATCTGCTTATGGCAGCCAATCTTCATTGGA TCAGCTTCGAGTTGCTGATTTAATGGAGTCCCTAGAGAAGGATTATGTTATTGTTAATCGTCATTTTTCTTCAATGGAAAATTTCTCTTATTACCTTGAA ACATCTCTGCAAGATAGCTCCACCAGCAAATCTTCTGTACAGCTACCACAGAAAAATAACCAGGATATGGTTGTTGCTATACAAACAGAGGCGTTTACTG GTAGTTCTGTTAGTAGTGCAAACGATCCTCAGGTCCATGGATCAGAGCCATTAACTGCATCATGTGTGCCAAATATATTAAGGGAAGTGCAAGGACTACC CATACCGCATCCCTCAATTAAGCTTCACTTCCTAAATCAGTATGCACAGGCAATTGTAGAACTAGCCCAAGAAAAGTATGATTCAGGATTGTTTCTGGAA TCATTTTCAGTTGAGCTTGTTGTTTTGGCTATATGGAAGAAAGTTCTTGAAATTTGCAACCACTGGGTAGCCTCTAATGAAGGGAGCGAATTACCTGAAA GCAGTTCAGCCAATGAATCTACATTTGTTCATGGAGGCATAGATTTGATCCCGCCTGCAAGTGGTAAAATGGATTTTATCGAGCCTTCTTCTGCCTACAA GTGGGCAGAAAAAAGTTTCATTCTCGCGTTTGATCGTACAGAGAAGTTATCGCATAATCTCCGATACATGGATGCTGCTGCTGAGATGCCTGATGCCATG GAACTGATATTCCAAGAAGCACTCGCTGTTGGGAGAAGTGGTGCCGTAGATGAATATATGGAGAACAAGGGTGGTGCTGATGTCTCATATTCCAAAGCAA TGCTTCTGCTTCATTTTATAGCAGAAGAAGCAACATCTCTCCCACTGAAACCTCCATTTTCATTAACTTCTGCTTGTAGGAAGCGAATCCAAAGCTACAT TCTCAACTTGCAGTCTCATAGATCTCACTTCTCAATGTTGCAGCCTATTCCTGAACAATCCCCTGATTCTCCTACCAAGTAG
AA sequence Show only first row Show all	>Potri.002G181000.2 pacid=42779801 polypeptide=Potri.002G181000.2.p locus=Potri.002G181000 ID=Potri.002G181000.2.v4.1 annot-version=v4.1 MDLNQTRLIGDYILGPIIGRGSFAVVRRAKHRSSCLEVAVKEIDKKLLSPKVSDNLLKEISILSTINHPNIIRLFESFETEDRIFLVLEYCDGGDLAGYI QRHGKVTEAVARHFMRQLAAGLQALQEKHLIHRDLKPQNLLLLSNDLTPQLKIGDFGFARSLTSSDLADTLCGSPLYMAPEIIQNKKYDAKADLWSVGAV LFQLVTGKPPFDGNSQYQLFQNILTSTELRFPQGALEELHPDCVDLCRSLLCRNPVERLTFKEFFNHKFFEEPRLLLDAKSPLLPQMKSVVEQFDASASN TRSQMGHCLHSANRNAILTSTSEHDNITMLAKVHDSTSRNDSVHGIVPSIVHDRMGRSAYGSQSSLDQLRVADLMESLEKDYVIVNRHFSSMENFSYYLE TSLQDSSTSKSSVQLPQKNNQDMVVAIQTEAFTGSSVSSANDPQVHGSEPLTASCVPNILREVQGLPIPHPSIKLHFLNQYAQAIVELAQEKYDSGLFLE SFSVELVVLAIWKKVLEICNHWVASNEGSELPESSSANESTFVHGGIDLIPPASGKMDFIEPSSAYKWAEKSFILAFDRTEKLSHNLRYMDAAAEMPDAM ELIFQEALAVGRSGAVDEYMENKGGADVSYSKAMLLLHFIAEEATSLPLKPPFSLTSACRKRIQSYILNLQSHRSHFSMLQPIPEQSPDSPTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G61960			Protein kinase superfamily pro...		Potri.002G181000 [exp]	0	1
AT2G45500			AAA-type ATPase family protein...		Potri.014G071900 [exp]	2.82	0.6478
					Potri.010G209501 [exp]	8.24	0.5892
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.005G054400 [exp]	14.89	0.6209
AT4G38350			Patched family protein (.1.2)		Potri.009G167000 [exp]	23.17	0.6474
AT2G34570		MEE21	maternal effect embryo arrest ...		Potri.009G159400 [exp]	32.17	0.6275
AT4G04180			P-loop containing nucleoside t...		Potri.004G004000 [exp]	43.74	0.5523
AT2G34930			disease resistance family prot...		Potri.015G024800 [exp]	45.82	0.6085
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206766 [exp]	46.24	0.5359
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	71.62	0.5890
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.017G029100 [exp]	83.36	0.5145

Compare expression of checked genes

Potri.002G181000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.